PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_08191-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 459aa    MW: 50963.1 Da    PI: 5.4328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_08191-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-13262308354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +a+ + E+ RR++iN ++  Lr+llP++     +K++ a+i+  A+eYI++L
  TRIUR3_08191-P1 262 KANFATEKERREQINVKYGALRSLLPSP-----TKNDRASIVGDAIEYINEL 308
                      68999***********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.872259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.70E-10260313No hitNo description
SuperFamilySSF474592.49E-12262319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10262308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-10266319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
KMIAEGGYFD GSRDAILMAG SLIHDSLDSI CDSTEIAQGN FHGPSFFIED ICNPTNLTSE  60
PARTINHIQH RAEFDMDQDL HGHMIQETQV ETSNWVPAMF GTQNHIISQQ SIEQQMDDYD  120
AASYPDGAHT TAPDLLNLLQ IPRYSMTTAF PSTEHIFGDP GQNAGNQLDI NNDVLGRAIH  180
DSGMMLGDST LPLQYNGNQS HLFKDLYHSL PQSFGLFSSD DERDRTMGVV GAAGNILQEI  240
DGRQFGSPKL GRSKKGGFGK AKANFATEKE RREQINVKYG ALRSLLPSPT KNDRASIVGD  300
AIEYINELNR TLKELTSLVE GDTKHRMKRL KLDDAARDNG ESSSLQQVKD DQDSQLNGAI  360
RSSWIQRRSK ECHVDVRIVG NEINIKFTEK KKTNSLLCAA KVIDEFRLEL IHVVGGIIGD  420
QRIFMFNTKI SEGSSVYASA LASKLLRAME MEHLAVDIF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3576691e-118AK357669.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1058O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146715.10.0transcription factor EAT1-like
SwissprotQ7X8R01e-167EAT1_ORYSJ; Transcription factor EAT1
TrEMBLT1LT950.0T1LT95_TRIUA; Uncharacterized protein
STRINGTRIUR3_08191-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.22e-48bHLH family protein