PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_08220-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 358aa    MW: 39450.6 Da    PI: 7.5746
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_08220-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.71.3e-171056349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     i+++ +r+vtfskRr g++K A+ LS L++++vav++ s++gk++ +
  TRIUR3_08220-P1 10 IDDDKQRSVTFSKRRVGLFKSASNLSALTGVKVAVVLESESGKMHAF 56
                     99*******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.7E-12159IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-9222IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.998460IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-16771IPR002100Transcription factor, MADS-box
CDDcd002661.36E-181074No hitNo description
PfamPF003194.0E-191056IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-92237IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-93758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
REIRVGVCHI DDDKQRSVTF SKRRVGLFKS ASNLSALTGV KVAVVLESES GKMHAFGTPS  60
VEPIIDAFLS RDPLIDPLAD KAGKARIASL QSKVARLDME NAMLEKRANL SLKHIKKIQA  120
ENPGMAANNI FSREKDICLE DLKRLFNDLL RVNEHIRHRM PPLHHGHAPR TGGPNVQQNQ  180
LLPRGPSQDH LKTHQASLQS TSSHHVPPQV LPPVPLPPTL QHTMEPSFHM QVPQMFQSTP  240
PPSTPHLASL LQPDLDQAHG LPPKPQSQLE EYASPYKTTE SSQTKTIPNF GGNDIAVRAS  300
LGYDNSVDAP SDQVHYNEIL GMDSYMGYNG RDVGQYNMGR DKWVNAPPES SGGNDGDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160252.11e-112agamous-like MADS-box protein AGL29
TrEMBLT1LTC20.0T1LTC2_TRIUA; Uncharacterized protein
STRINGTRIUR3_08220-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-13AGAMOUS-like 62