PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_08238-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GeBP
Protein Properties Length: 228aa    MW: 25402.9 Da    PI: 6.6974
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_08238-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57343.96.6e-1439128297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkv.sksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                      +f+r+ws +De+ +L +l   ++++g+ p+ d  a+++ + ++++ ++  +++l  K+  L++++   +kk   g+    skehd+ ++elsk+
  TRIUR3_08238-P1  39 AFSRIWSTDDEVRILEALAAHQKQHGTLPQPD--ALVDALAGKLDNRAyGSKELQGKVLALRRRYLALSKK---GEL--PSKEHDRRVLELSKM 125
                      699***********************887775..8999999999887516889****************99...544..5799*********** PP

           DUF573  95 iWg 97 
                      +W+
  TRIUR3_08238-P1 126 VWE 128
                      **7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-1940128IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
EEEEGESEEE APPPPKLAPK QAPEGRKPQA AAETKKPAAF SRIWSTDDEV RILEALAAHQ  60
KQHGTLPQPD ALVDALAGKL DNRAYGSKEL QGKVLALRRR YLALSKKGEL PSKEHDRRVL  120
ELSKMVWEGG DMVTAAAASA KSAKAANGQE PKGFEEMCDL YPYLAEHVKE LDAANPGIFK  180
RQFGMMDEDK ARAMDEKIKR QRVAQMKVEL RRHDLVREVT KAIIDLVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201KIKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691530.0AK369153.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085O11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200172.11e-139splicing factor, arginine/serine-rich 19-like
TrEMBLA0A3B6NSX21e-163A0A3B6NSX2_WHEAT; Uncharacterized protein
TrEMBLA0A446VPV31e-163A0A446VPV3_TRITD; Uncharacterized protein
TrEMBLT1LTD91e-163T1LTD9_TRIUA; Uncharacterized protein
STRINGTRIUR3_08238-P11e-164(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-10DNA-binding storekeeper protein-related transcriptional regulator