PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_08856-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WOX
Protein Properties Length: 240aa    MW: 27140.1 Da    PI: 9.669
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_08856-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.8e-092412357
                     SS--HHHHHHHHHHC....TS-HHHHHHHHHHH.HHHHHC CS
         Homeobox 23 rypsaeereeLAkkl....gLterqVkvWFqNr.Rakekk 57
                     r+p+aee+ + +++l     ++ ++V++WFqNr R+k+k+
  TRIUR3_08856-P1  2 RTPTAEEIHQVTARLqehgPIEGKNVFYWFQNRlRQKQKQ 41
                     89*************99999*************9999996 PP
2Wus_type_Homeobox55.81.1e-181412465
  Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +rtP++eei+++ta+L+e+G ie+kNVfyWFQNr  R++qkq
    TRIUR3_08856-P1  1 MRTPTAEEIHQVTARLQEHGPIEGKNVFYWFQNR-LRQKQKQ 41
                       79*******************************7.5777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000469.3E-7241IPR001356Homeobox domain
SuperFamilySSF466895.46E-5247IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRTPTAEEIH QVTARLQEHG PIEGKNVFYW FQNRLRQKQK QQQQQRSDYF ARQIRRPQPL  60
PMLRRTPGNS FSPVQLQAPP APNTPACNRE GMYMQQPCYM TGQAAQASVN AAYYSQMQPS  120
LMHPNLETMA HGNIQAQAQA AMYFQTTASN NSNTQQPRAV QFPSTNNSYG APEAYSRRPV  180
LLNLFPQYPT FANRERTLHT ESAGSPRPST SRSFSLEAES SEVPSGDGSR SFYDFFGEGH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165955.11e-152WUSCHEL-related homeobox 5-like
TrEMBLM7ZSR71e-176M7ZSR7_TRIUA; WUSCHEL-related homeobox 5
STRINGTRIUR3_08856-P11e-176(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.14e-12WUSCHEL related homeobox 2