PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_08964-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 163aa    MW: 17947.2 Da    PI: 9.7633
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_08964-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.64.8e-204074135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ C+tt+Tp+WR+gp g++tLCnaCG++yrkk++
  TRIUR3_08964-P1 40 CVECRTTTTPMWRSGPTGPRTLCNACGIRYRKKRR 74
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-163484IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-143775No hitNo description
Gene3DG3DSA:3.30.50.101.3E-153875IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.6644070IPR000679Zinc finger, GATA-type
CDDcd002024.53E-154075No hitNo description
PfamPF003201.2E-174074IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404065IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MARNLMDFSA SEFVGTFNYV VATMVIGVAP AAGEGGRMCC VECRTTTTPM WRSGPTGPRT  60
LCNACGIRYR KKRRQELGLD NKPQNQQLNQ QQHQQQQQQQ QQQQREDHGE ATSAVKDSSS  120
SSNNKSSNLQ VVKKKRTVSM GVEEAAFLLM ALSSSSTPPL LHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2506742e-85AK250674.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf93f15, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179907.11e-72GATA transcription factor 17-like
TrEMBLM7ZGJ01e-118M7ZGJ0_TRIUA; GATA transcription factor 23
STRINGTRIUR3_08964-P11e-119(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.14e-19GATA transcription factor 23