PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_09121-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 107aa    MW: 12543.3 Da    PI: 8.7544
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_09121-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.3e-1826106589
                      -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      +t+ d ++s+ +v+p +f+ ++ g k   s t+ le ++g++++v +  + +++++vl++GW+ Fv+an++ e+D+++F++ g+ +
  TRIUR3_09121-P1  26 FTHMDRNSSHSMVIPESFV-NYfGWK--LSGTIELEAPNGNVYDVGI--TERRNKTVLRSGWEAFVDANHIVERDSLMFRYRGNCR 106
                      466799999**********.552544..667****************..999999*************************998755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-1919107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-1921106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.40722107IPR003340B3 DNA binding domain
CDDcd100171.39E-1623107No hitNo description
SMARTSM010191.1E-626107IPR003340B3 DNA binding domain
PfamPF023623.8E-1726106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
GGEMRKSCEC CKRYWTHLHG KVKCFFTHMD RNSSHSMVIP ESFVNYFGWK LSGTIELEAP  60
NGNVYDVGIT ERRNKTVLRS GWEAFVDANH IVERDSLMFR YRGNCRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158256.15e-70B3 domain-containing protein Os03g0619600-like
SwissprotQ10GP03e-39Y3198_ORYSJ; Putative B3 domain-containing protein Os03g0619850
TrEMBLT1LVR13e-75T1LVR1_TRIUA; Uncharacterized protein
STRINGTRIUR3_09121-P16e-76(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-13B3 family protein