PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_09267-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26358 Da    PI: 9.7991
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_09267-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.51.3e-26959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     +ri+n +nrqvtfskRr g++KKA EL +LCda+ a+i+fsstg+ly+++s
  TRIUR3_09267-P1  9 ERIDNATNRQVTFSKRRGGLMKKARELAILCDADLALIVFSSTGRLYDFAS 59
                     69***********************************************86 PP
2K-box73.65.5e-2582171998
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + +++a+ +q+e++ L+++++nLq+++R+llGe+L+  ++++Lq L +qLe+sl ++R++K++++ e+i+el +k   +q+en +L kk+
  TRIUR3_09267-P1  82 NPTSEAKLWQREVTTLRQQVHNLQHNNRQLLGEELSGSTVRDLQFLVNQLETSLHSVRKRKEQVMAEEIHELNQKGFLIQKENIELGKKV 171
                      67789999******************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.188161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.77E-39277No hitNo description
SuperFamilySSF554558.11E-31291IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-2484171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.63987191IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGRGKIAIER IDNATNRQVT FSKRRGGLMK KARELAILCD ADLALIVFSS TGRLYDFASS  60
RGMEAILERY QEAKQEHCGV LNPTSEAKLW QREVTTLRQQ VHNLQHNNRQ LLGEELSGST  120
VRDLQFLVNQ LETSLHSVRK RKEQVMAEEI HELNQKGFLI QKENIELGKK VRITHKQNIE  180
LQKKLSGAMR SSEQQASGSS SKAAAGLLLS TRAGEPRIFI DLELRQQEHE DE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-22177176MEF2C
5f28_B3e-22177176MEF2C
5f28_C3e-22177176MEF2C
5f28_D3e-22177176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5029010.0AM502901.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM31A (WM31A gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171925.11e-154MADS-box transcription factor 25-like
SwissprotQ84NC51e-105MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLM7ZC051e-168M7ZC05_TRIUA; MADS-box transcription factor 25
STRINGTRIUR3_09267-P11e-168(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-65AGAMOUS-like 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]