PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_09409-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 229aa    MW: 25687 Da    PI: 7.6734
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_09409-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-12180227347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      rW+  E+e l ++v+q+G+ +Wk I  + +    gRt  ++k++w++ 
  TRIUR3_09409-P1 180 RWSSVEEETLRKGVEQFGSSNWKDILIHNPdafIGRTTVDLKDKWRNM 227
                      9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-13173229IPR009057Homeodomain-like
PROSITE profilePS5129414.946173229IPR017930Myb domain
SuperFamilySSF466895.74E-14175228IPR009057Homeodomain-like
SMARTSM007170.0011177229IPR001005SANT/Myb domain
PfamPF002493.6E-10180227IPR001005SANT/Myb domain
CDDcd116609.68E-18181229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MQHADPTTPQ CYFMPIIDGT ILELTGGKEK TREILSKIED RISTPQVHKV IHDLKSSCAD  60
LHNVVDDPLP AAKAAADKVL AARMDKAVHI NDEEFNNQAA NCSIAGPSAV NDQGDTLRKG  120
TPSSLMDWNP TAQSLLWEDS LDPDGSRSQS HRPHLPSPRR IPVSPLQVAE NKARRRRARR  180
WSSVEEETLR KGVEQFGSSN WKDILIHNPD AFIGRTTVDL KDKWRNMMR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3755070.0AK375507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3096E16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185046.11e-132uncharacterized protein LOC109770747
TrEMBLM7ZKI11e-169M7ZKI1_TRIUA; Telomeric repeat-binding factor 1
STRINGTRIUR3_09409-P11e-170(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.14e-15TRF-like 5