PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_09477-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 431aa    MW: 46359.7 Da    PI: 9.542
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_09477-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.47.2e-42143219278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      CqvegC+adls++k+yhr+h+vCe h+kap+v+v+gle+rfCqqCsrfh+l efD++krsCrrrL++hn+rrrk+q+
  TRIUR3_09477-P1 143 CQVEGCKADLSSVKDYHRKHRVCELHAKAPKVVVAGLERRFCQQCSRFHALAEFDQKKRSCRRRLNDHNSRRRKPQP 219
                      **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-33135204IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.727140217IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-39142222IPR004333Transcription factor, SBP-box
PfamPF031106.4E-32143216IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGNEPLHSSG GSGSGTFSSS SEMGYGSSKS SMSASIDSSS KAGNNMEFRF APVKNPDRNT  60
SKNTELGKVD NTRTGTSPSP VVTVSSGEPV IGLKLGKRTY FEDVCGGQSV KSSPSGAASA  120
PNKSPAVGKK AKAEQQKPHN SYCQVEGCKA DLSSVKDYHR KHRVCELHAK APKVVVAGLE  180
RRFCQQCSRF HALAEFDQKK RSCRRRLNDH NSRRRKPQPE AISFSSSRMS TMFYDARQQP  240
NFLFGQAPYV QMRSCGSSSW DDPGGFKVTH TKAPWLKPTT AAGVHGMHLS SQQMSDNIMP  300
HGAHHGFDGF MSFKGTCTKF PNQGVQASAV ASDSSGAPDL QHALSLLSSN PVGAANLQPS  360
PQMHSGVAAI AGAPNPAMHA LGSSAGLWLD CGQPLDDHPR FQVFERLGDH DSELQLPKPS  420
YDHASHFDRM H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-281432161184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198215KKRSCRRRLNDHNSRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478850.0KF447885.1 Triticum aestivum squamosa promoter-binding-like protein 3 (SPL3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187264.10.0squamosa promoter-binding-like protein 3
RefseqXP_020187265.10.0squamosa promoter-binding-like protein 3
RefseqXP_020187266.10.0squamosa promoter-binding-like protein 3
SwissprotA2X0Q61e-165SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z81e-165SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLM7YS580.0M7YS58_TRIUA; Squamosa promoter-binding-like protein 3
STRINGTRIUR3_09477-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-38squamosa promoter binding protein-like 2