PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_09592-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 490aa MW: 56585.7 Da PI: 6.4632

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_09592-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.7	3e-26	9	96	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA+++GFs+++ +++k k++ +i +rtf+Cs++g ++e+k++ e+ + +r++tr+gC+a++k++++ +g ++v+++++ HnH+la TRIUR3_09592-P1 9 SFYNKYAYSLGFSIQRGNHHKVKNSSTIQQRTFTCSRQGVHAEDKRE-EEFSYSRPKTRCGCDARMKISLT-NGIYNVYEFKEAHNHSLA 96 5*****************************************999.99999**************.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-22	9	96	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-29	217	311	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
FLSEEEAYSF YNKYAYSLGF SIQRGNHHKV KNSSTIQQRT FTCSRQGVHA EDKREEEFSY 60 SRPKTRCGCD ARMKISLTNG IYNVYEFKEA HNHSLATGNM SQYLRSHRKV TEAQLANAEV 120 AKSVGISNKA TIDLMTKEAC GPENLGFIST DMKNRLYSKR TLKAKVGDTG GVLEYMVKKV 180 SEDSFFYSIQ VDEDDLITNI FWTDSKMVSD YALFGDVICF DTTYRKLDDG RPFGLIVGVN 240 NHKKTIVFGA ALLYDETAES FAWLFRTFLT VMSGKHPHTI LTDEDAAMAK AIRSVLPHSD 300 HRLCVWHMNQ NACKHLGGVV TDYKKFNADF QHCIYDIEDE DEFISAWNEM LDNTQRSESM 360 NNELKRYISS KYDMLTFFEH FERLVADKRF EEVRCDFKAT QSSPKLKAES YILRQASTTY 420 TPPIFKMFQE QVLRTLNYDT YLCDDSDNEK VYKVKFHEAD ESYFMVANYA EKLAQDVEKC 480 LKHRSDPDIG

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

FLSEEEAYSF YNKYAYSLGF SIQRGNHHKV KNSSTIQQRT FTCSRQGVHA EDKREEEFSY  60
SRPKTRCGCD ARMKISLTNG IYNVYEFKEA HNHSLATGNM SQYLRSHRKV TEAQLANAEV  120
AKSVGISNKA TIDLMTKEAC GPENLGFIST DMKNRLYSKR TLKAKVGDTG GVLEYMVKKV  180
SEDSFFYSIQ VDEDDLITNI FWTDSKMVSD YALFGDVICF DTTYRKLDDG RPFGLIVGVN  240
NHKKTIVFGA ALLYDETAES FAWLFRTFLT VMSGKHPHTI LTDEDAAMAK AIRSVLPHSD  300
HRLCVWHMNQ NACKHLGGVV TDYKKFNADF QHCIYDIEDE DEFISAWNEM LDNTQRSESM  360
NNELKRYISS KYDMLTFFEH FERLVADKRF EEVRCDFKAT QSSPKLKAES YILRQASTTY  420
TPPIFKMFQE QVLRTLNYDT YLCDDSDNEK VYKVKFHEAD ESYFMVANYA EKLAQDVEKC  480
LKHRSDPDIG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683537.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	T1LWZ1	0.0	T1LWZ1_TRIUA; Uncharacterized protein
STRING	TRIUR3_09592-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-83	FAR1-related sequence 5