PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_09593-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 330aa MW: 38542 Da PI: 9.8007

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_09593-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3.1e-08	83	103	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++ G+C++Gd+C+F+H+ TRIUR3_09593-P1 83 VCYAFQK-GECSRGDTCRFSHD 103 699**.***********7 PP
2	zf-CCCH	24.6	4.4e-08	111	133	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C f++ G+C++G++C+F+H+ TRIUR3_09593-P1 111 RGVCYAFQK-GECSRGASCRFSHD 133 567****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.244	78	105	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-5	80	104	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.02E-5	80	103	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.9E-6	83	103	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	83	104	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.549	109	135	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.6E-6	110	133	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-4	110	134	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.9E-4	113	135	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MGPGAEGMEL DSRSFQDALC RDSSLRIRKS GKIYVCSFNS SGDGRGNNGL RNANTGWGSK 60 EDDPKWEHDR HRGPQNKGES RGVCYAFQKG ECSRGDTCRF SHDEQVAVQG RGVCYAFQKG 120 ECSRGASCRF SHDEQRNANT DRGSREDSNA RRQHDHDPPK SHKNFPDRTK EEARSGDRNG 180 QSSRSELYRD RDSRTRYGDR DTKDRDRNMQ EKSPERSRGD RQRGDDRGRE DRSDTKDRDR 240 NGHEKSPERS RGDRQRGDDR GREDRSDVKD RDRNGYEKSP ERPRGDRQRG DDRRREDRSE 300 SKRSRHDRDS GVRYERRGDE EEERYRKSRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372818	0.0	AK372818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3013K18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020159671.1	1e-162	zinc finger CCCH domain-containing protein 25-like
Swissprot	Q10B98	6e-48	C3H25_ORYSJ; Zinc finger CCCH domain-containing protein 25
TrEMBL	M7ZT36	0.0	M7ZT36_TRIUA; Zinc finger CCCH domain-containing protein 25
STRING	TRIUR3_09593-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5918	3	3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]