PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_09679-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 300aa    MW: 31766 Da    PI: 6.0394
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_09679-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-092342662254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ++yps +e+ +LA ++gL+ rq+++WF N R +
  TRIUR3_09679-P1 234 DPYPSDNEKLRLAVSTGLSRRQISNWFINARVR 266
                      89*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.8E-9210274IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-24215276IPR009057Homeodomain-like
SuperFamilySSF466892.74E-17217279IPR009057Homeodomain-like
CDDcd000862.70E-12221271No hitNo description
PfamPF059203.0E-17227266IPR008422Homeobox KN domain
PROSITE profilePS5007111.872229270IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVTKRLQESG SPKQARPVAT DSDNGPLMLL RLREQCCREH HPAASPAGPL ALTLGAPAAK  60
TDDVCRCCCA SDADAPALAP GVMPSVDSVL SGSRYLRPVQ ELLRDAVSAV VGGGDDDESA  120
GGGSEDDAPG EAKNDGGAGA VQAKLLGLLS EVRPHYSIHP LQARPLRYPP SYLFFPRLAY  180
PWRLMNLSLA AGGAAGALLP GAEPRGVVVC KPLRGLPEGS VAVLRAWLFN HFIDPYPSDN  240
EKLRLAVSTG LSRRQISNWF INARVRLWKP MIEEMYADEF SDVSSRDDDA GGGGAAASSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-16216274563Homeobox protein Meis2
4xrm_B4e-16216274563Homeobox protein Meis2
5bng_A4e-16216274159Homeobox protein Meis2
5bng_B4e-16216274159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733881e-100AK373388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3029F10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149612.14e-76BEL1-like homeodomain protein 3
TrEMBLM7ZML70.0M7ZML7_TRIUA; BEL1-like homeodomain protein 11
STRINGTRIUR3_09679-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-33BEL1-like homeodomain 11