PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_09788-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 352aa    MW: 37219.5 Da    PI: 6.5095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_09788-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.8e-13122173155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ +  Lr+l+P +   +  + + a+i   A++Y+k+L+
  TRIUR3_09788-P1 122 QRMTHIAVERNRRKQMNEYLGVLRSLMPAS---YVHRGDQASIIGGAINYVKELE 173
                      79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.10E-13120177No hitNo description
Gene3DG3DSA:4.10.280.105.1E-14120177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-16120184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.199121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MALEAVVFSK GFFGRCAMAA EGVGGGGGVW GGNEHGHGGG VELDGSNAHC GAAVASTSVM  60
IPSAEVPEGS SSLLALPPPG HGGDRGDADD GAVGAASASG AAGRRKRRRA RSVKNIEEAE  120
SQRMTHIAVE RNRRKQMNEY LGVLRSLMPA SYVHRGDQAS IIGGAINYVK ELEQLVQSLE  180
AHRHARLRDD CPVSGDVDSA AAVPFVDFFT FPQYTMSVRH APATPAADAS ADGSGGNADN  240
DGTSGSKQSA VADIEVTIVE SHASLKVLSR RRPRQLLRIV AGLQGHRLAV LHLNATSAGH  300
MALYCLSLKV EDDCRLSSVD DIAAAVHRIV ETIEREEEEE EQRRRQQQQS CT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104108RKRRR
2122133RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076268e-81AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
GenBankHQ8588618e-81HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156069.10.0transcription factor bHLH94-like
SwissprotQ9C7T41e-67BH096_ARATH; Transcription factor bHLH96
TrEMBLM7Z6880.0M7Z688_TRIUA; Transcription factor bHLH96
STRINGTRIUR3_09788-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]