PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_09932-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 162aa MW: 17756.9 Da PI: 9.6757

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_09932-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.2e-09	22	61	8	47
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 E l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky TRIUR3_09932-P1 22 ESRLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 61 56789999*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.1E-4	14	64	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	9.231	18	66	IPR017930	Myb domain
CDD	cd00167	9.90E-8	20	62	No hit	No description
Pfam	PF00249	5.2E-7	22	61	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	3.1E-11	22	64	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.65E-11	22	66	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-7	22	60	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MVDLMRFVQS AGLEQQQQPE IESRLFLLGL KKYGKGDWRN ISRNFVQTRT PTQVASHAQK 60 YFIRLSSGGG KDKRRSSIHD ITTVHLDDQP PSPSQSSMIT QSSAPAPSPA TGQYSLPADT 120 KQHGGANAPY NSPPSYGMGL QDQGLQCGPL HDQLAANRSM LY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200804.1	8e-96	transcription factor DIVARICATA-like
Refseq	XP_020200805.1	8e-96	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-35	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	M8ANY0	1e-116	M8ANY0_TRIUA; Transcription factor MYB1R1
STRING	TRIUR3_09932-P1	1e-117	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7886	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	1e-17	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]