PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_10022-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 391aa MW: 41171.1 Da PI: 6.9628

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_10022-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	1e-09	212	260	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq TRIUR3_10022-P1 212 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 260 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.37E-17	207	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.38E-11	207	264	No hit	No description
PROSITE profile	PS50888	15.65	209	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-16	210	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-7	212	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-11	215	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MDMNESSEKG MEGNGSSGPG GGIPVEWQSQ FSGGGGFSAH HHQQHPHMMD SFASGMWPAA 60 SQHGAGFLAP VPGFLPPPGL GGHFPVDSGF IERAARSSCF VGPGSGGGMM GAGAFGGAGD 120 QHMGSAFGEG TLVRCSRTSL CFIQVMGGDQ VQSSNVAADS ANESAQSKDK GEESSPATGT 180 TTGGKSKGKG AKESSEKEDY IHVRARRGQA TNSHSLAERL RREKISERMK LLQDLVPGCS 240 KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPRLDLN IEGLLSKDLL RFPGVSSSSM 300 GFSPEMMHPQ LQLSQPGLMQ GGAAAMANSD VFRRIMQAQL GAKDGSHSQM AHALNGPFSD 360 HVAQMAYPSM GSSHSHSQDL SIRPSQDAYQ M

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MDMNESSEKG MEGNGSSGPG GGIPVEWQSQ FSGGGGFSAH HHQQHPHMMD SFASGMWPAA  60
SQHGAGFLAP VPGFLPPPGL GGHFPVDSGF IERAARSSCF VGPGSGGGMM GAGAFGGAGD  120
QHMGSAFGEG TLVRCSRTSL CFIQVMGGDQ VQSSNVAADS ANESAQSKDK GEESSPATGT  180
TTGGKSKGKG AKESSEKEDY IHVRARRGQA TNSHSLAERL RREKISERMK LLQDLVPGCS  240
KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPRLDLN IEGLLSKDLL RFPGVSSSSM  300
GFSPEMMHPQ LQLSQPGLMQ GGAAAMANSD VFRRIMQAQL GAKDGSHSQM AHALNGPFSD  360
HVAQMAYPSM GSSHSHSQDL SIRPSQDAYQ M

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362778	0.0	AK362778.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010A07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150009.1	0.0	transcription factor bHLH49-like
Swissprot	Q9CAA9	2e-59	BH049_ARATH; Transcription factor bHLH49
TrEMBL	M7YB08	0.0	M7YB08_TRIUA; Transcription factor bHLH49
STRING	TRIUR3_10022-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-55	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]