PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10045-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 906aa    MW: 101875 Da    PI: 7.8073
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10045-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.7e-06557579123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cg +F+ + +Lk+H+++H
  TRIUR3_10045-P1 557 HTCEECGACFRKPAHLKQHMQSH 579
                      79*******************99 PP
2zf-C2H220.61.2e-06625649123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  dC+ s+ rk++L+rH+ tH
  TRIUR3_10045-P1 625 FACPleDCPFSYIRKDHLNRHMLTH 649
                      78**********************9 PP
3zf-C2H215.74.4e-05654679123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++Cp   Cgk+Fs k n +rH +  H
  TRIUR3_10045-P1 654 FTCPleGCGKRFSIKANIQRHVKEmH 679
                      89********************9988 PP
4zf-C2H215.35.8e-05698720323
                      ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                      C+   C+k F+ +s+Lk+H  +H
  TRIUR3_10045-P1 698 CQeeGCKKAFKYPSQLKKHEESH 720
                      77779**************9988 PP
5zf-C2H215.26.4e-05787811223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      kC+   C  sFs+ksnL++H++  H
  TRIUR3_10045-P1 787 KCSfdGCECSFSTKSNLNKHMKAcH 811
                      799999****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.4813565IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.87966100IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.2E-867167IPR011990Tetratricopeptide-like helical domain
PfamPF015350.66897IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.353136166IPR002885Pentatricopeptide repeat
PfamPF015352.6E-4141164IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.4E-4141163IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.627167197IPR002885Pentatricopeptide repeat
PfamPF015350.0043169195IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.986198232IPR002885Pentatricopeptide repeat
PfamPF015354.3E-4200229IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.2E-4200233IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.079268298IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.2E-8269299IPR011990Tetratricopeptide-like helical domain
PfamPF015350.0039273296IPR002885Pentatricopeptide repeat
PfamPF130417.4E-11298346IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.233299333IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.3E-8301335IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.824334364IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.138370400IPR002885Pentatricopeptide repeat
PfamPF015350.42373397IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.2E-8400464IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.415402432IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.95436470IPR002885Pentatricopeptide repeat
SMARTSM0035542511534IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.3557584IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5557582IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0053557579IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280559579IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-6623651IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.515625654IPR007087Zinc finger, C2H2
SMARTSM003557.4E-4625649IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280627649IPR007087Zinc finger, C2H2
SuperFamilySSF576676.0E-9635686No hitNo description
Gene3DG3DSA:3.30.160.604.3E-6652676IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.217654684IPR007087Zinc finger, C2H2
SMARTSM003554.0E-4654679IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280656679IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245696721IPR007087Zinc finger, C2H2
SMARTSM003550.039696720IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.0E-6698720IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280698720IPR007087Zinc finger, C2H2
SMARTSM003555728753IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280730753IPR007087Zinc finger, C2H2
SMARTSM0035532756777IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.24E-8771828No hitNo description
Gene3DG3DSA:3.30.160.603.6E-6771808IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.198786816IPR007087Zinc finger, C2H2
SMARTSM003550.0016786811IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280788811IPR007087Zinc finger, C2H2
SMARTSM003552.2817843IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642817843IPR007087Zinc finger, C2H2
PROSITE patternPS000280819843IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MNRSVCHHLL AQCRSLRELE RIHARAVTHG LHPCNQSISC KLFRCYADFG RPAEARRLFG  60
EIPCPDLVSF TSLMSLHLQL NQHHEAMSAF SRAIASGHRP DGFVVVGALS ASGGAGDLRA  120
GLGIHCLIFR CGLGSELVVG NALVDMYSRC GRFEGALGVF DEMAVKDEVT WGSMLHGYMK  180
CVGVDSALSF FDRMPVKSTV SWTALVTGHV QAKQPIRALE IFGRMVLEGH RPTHVTIVGV  240
LSACADIGSL DLGRVIHGYG SKFNISTNII VSNALMDMYA KSGSIEMAFA VFEEVLVKDA  300
FTWTTMISSF TVQGDGIKAL ELFEDMLRSG IVPNSVTFVS VLSACSHAGL IQQGRELFDK  360
MRRIYNIKPQ LEHYGCIVDL LGRGGLLEEA EALIYDMDVE PDTVIWRSLL SACLVHGNDR  420
LAEIAGREII KREPGDDGVY VLLWNIYASS DRWKQALDIR KQMLTRKIFK KPGCSWIEVD  480
GGVHEFLMSS GDGIDGDEKS EETHGKDIRR IKCEFCTVVR SKMYLIRAHM VAQHKDELDA  540
SEIYDSNGEK VVYGVGHTCE ECGACFRKPA HLKQHMQSHS KEVSLRRVRG SNNKMSSQKA  600
STILHWFSAR YGDNTRKNKL IGRSFACPLE DCPFSYIRKD HLNRHMLTHE GKLFTCPLEG  660
CGKRFSIKAN IQRHVKEMHE DEHECKIDDT KSNQQVICQE EGCKKAFKYP SQLKKHEESH  720
AKLDYVEVVC CEPGCLKTFT NAKCLRAHNQ SCHLYTHCDI CGEKHLRKNI KRHLRAHDEV  780
HSTERLKCSF DGCECSFSTK SNLNKHMKAC HDQVRPFECR VAGCGKTFPY KHVRDNHEKS  840
SCHVYVEGDY EEMDEQLRSR RGGGRKRSAV TVETLTRKRV TIPSEVSSLD DGAEYMRWML  900
SDGDDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D9e-5494124330PLS9-PPR
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745270.0AK374527.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3068C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181266.10.0putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic
TrEMBLT1LY660.0T1LY66_TRIUA; Uncharacterized protein
STRINGTRIUR3_10045-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-106transcription factor IIIA