PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10106-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 1413aa    MW: 158423 Da    PI: 4.8353
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10106-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08797819527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      +C+ ++  GtC yG++C+F+H+p
  TRIUR3_10106-P1 797 NCPSYMSKGTCTYGPSCHFNHPP 819
                      7********************96 PP
2zf-CCCH352.4e-11891913426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C++++rtG C+yG +C+F+H+
  TRIUR3_10106-P1 891 RNCDYYMRTGACRYGKNCHFNHP 913
                      79********************9 PP
3zf-CCCH27.45.6e-0911071132227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                       + + C+f++r+G Ck+ + C+++H++
  TRIUR3_10106-P1 1107 GKPDCPFYMRFGDCKFASACNYHHPK 1132
                       7899********************96 PP
4zf-CCCH277.6e-0911411166227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                       ++++C+f ++ G+Ck  ++CkF H++
  TRIUR3_10106-P1 1141 DEPECPFLMKRGYCKLRAQCKFYHPE 1166
                       689*********************96 PP
5zf-CCCH19.31.9e-0612101236127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                       +++++Cr+++++G Cky + C F+H++
  TRIUR3_10106-P1 1210 PGQPECRYYLQFGKCKYLSACIFHHPK 1236
                       5789*********************96 PP
6zf-CCCH31.43.3e-1012481274127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                       ++++ C+f+++tG C++G+ C F H++
  TRIUR3_10106-P1 1248 PGMPDCPFYMKTGKCQFGSACEFRHPK 1274
                       5789*********************96 PP
7zf-CCCH18.82.9e-0613181343126
                       --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                       +++++C++++r G+Ck+  +Ck++H+
  TRIUR3_10106-P1 1318 PGEPECNHYMRQGYCKFQMNCKYHHP 1343
                       5799*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138553.0E-7262IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.102.1E-19275IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520586.33E-16276IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.60.120.2009.1E-478118IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561128.4E-1395168IPR011009Protein kinase-like domain
PfamPF000696.7E-7111167IPR000719Protein kinase domain
PROSITE patternPS001070115138IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:3.30.200.206.2E-13119167No hitNo description
SMARTSM003563.7E-4792819IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5792819IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788792820IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-7797819IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5798817IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6887914IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601887915IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6890915IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9891913IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4893913IPR000571Zinc finger, CCCH-type
SMARTSM003560.001611051132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.45511051133IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-511071132IPR000571Zinc finger, CCCH-type
SMARTSM003560.02511391166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.37111391167IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-511411166IPR000571Zinc finger, CCCH-type
SMARTSM003560.0312091236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.55412091237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.63812471275IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-612471274IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-812491274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-412531273IPR000571Zinc finger, CCCH-type
SMARTSM003560.02513171344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.92513171345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-513201346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1413 aa     Download sequence    Send to blast
MKLQSLKIND NNFSGSLPGA IGNLAGLQIM LDVSNNNLSG VLPQQLGKLE MLEFLNLSHN  60
QFNSSIPSSF ASMRKPQESV TAEARDLFSV WNFDGRLAFD DIVRATEDFD DKYIIGTGGY  120
GKVYKAQLQD GKLVAVKKLH QTEEELDDER RFCNEMEILS QIRQRSIDQD QDRHHHHHVP  180
RAKRALHLPQ PPTPSPYRPP SAAVEHHQDQ DQVQEEPCGG LLDEAALHPH LHLHLHQDQD  240
QEGLNLLEQH KDDAAAKDDH EEEVEQGDAT IDDDNAVKHH HHEVVEQSVI HDAVALAVAL  300
DDDQDKKPLI EQCTSTTSSS CQQLTTAMEN DDDALVQVQD ATHPRDQDIA AEGQETPEAH  360
QLGSTENADA LVQVQEEGAT AVDDHDKAVD QCITYDDLGT TMEDDVAKDD QEVAEQGVID  420
QGYAPMDGDN SVKHHEVLLL SAAQGTRPTT HDIAAAEDQG KNVEQCTTYY DLGTTMKSDD  480
DVDDNATVEE QEVLEEQGVV DLTMDDDDSV QDHKVLQQGI IDGTDDIAVE KQEKVLEQCS  540
RATKDEYTVK EKEMVVEQGV IDPRYMDLAT EDQVKLSIVD DQGTVPMDDI VVKDHDKAVA  600
QYASDAIVTI KDESPVEEHD TVGNQGVIDK NGRTKDDIDV EGHGYLKEQV IVDNWGTSSD  660
ATALEGQKNE AEPRIGDAQI AGKDMDGVHA EGNMMEQKTG DKQGATQSDF TVDKHKDVVE  720
RVRHEWGAPE DDRAIDTAAY QGTGDWGIVS EEKVKLPEDD RAMDMAAYQG TGDWGTASKE  780
KYKLPARRYP QKPRKLNCPS YMSKGTCTYG PSCHFNHPPW TFESLINMYL IHYFVHELFS  840
NLSSSFLMML SLQQLKSRSD ESWRPSERRN HGAAEILELN RLGLPIREGA RNCDYYMRTG  900
ACRYGKNCHF NHPDHVIDAQ FNPPTGWEDN ALQQMEKSSD RTLDETSHMK KSSDDATLDN  960
RSHMKKSSDD ATFDDRSHLK KPSDGATLDD RSHLKKPSDG AIVDDTSYSK KSSDHDNSSS  1020
SGVLPPSIFR MLLPPQKVLP GTEGKAKKKS GWSSDDSDGC CSADSSDGPL CKQGGHVDYP  1080
ERPGRPEYHH PKQSKDKEEV NYPERPGKPD CPFYMRFGDC KFASACNYHH PKDKYPAGRP  1140
DEPECPFLMK RGYCKLRAQC KFYHPEASNP TMQSPTDAKR SVTTDEHHPS TRITLQDYML  1200
PQQPQYPERP GQPECRYYLQ FGKCKYLSAC IFHHPKDRLA AHSDQIGPGM PDCPFYMKTG  1260
KCQFGSACEF RHPKDIHSSS TTEEAFGERT GSGAYDSLTR SDNGVEQQEE SIMYPERPGE  1320
PECNHYMRQG YCKFQMNCKY HHPGDRLSKK HEVIRTDHLS KAGTRWLPHE CYQRKGCGIS  1380
AFNSVQTWTS IPKSYGPRLG GQQHCCALRL MEE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692020.0AK369202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181184.10.0uncharacterized protein LOC109766829
TrEMBLM7YXT20.0M7YXT2_TRIUA; Zinc finger CCCH domain-containing protein 37
STRINGTRIUR3_10106-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.18e-43floral homeotic protein (HUA1)