PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10111-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 244aa    MW: 27016.3 Da    PI: 9.3568
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10111-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1858111356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t+eq e Le  F+++r++ + ++  LA++lgL+ +qV vWFqNrRa++k
  TRIUR3_10111-P1  58 KKRRLTDEQAEMLELSFREERKLETGRKVYLAAELGLDPKQVAVWFQNRRARHK 111
                      45689***********************************************99 PP
2HD-ZIP_I/II1123.9e-3658144288
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                      kkrrl++eq+++LE sF+ee+kLe+ rKv la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da   ++++Le+ev+ L 
  TRIUR3_10111-P1  58 KKRRLTDEQAEMLELSFREERKLETGRKVYLAAELGLDPKQVAVWFQNRRARHKSKTLEQEFARLKHAHDAAILHKCHLENEVSLLI 144
                      9*********************************************************************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1748113IPR009057Homeodomain-like
PROSITE profilePS5007115.9253113IPR001356Homeobox domain
SMARTSM003894.2E-1656117IPR001356Homeobox domain
PfamPF000465.0E-1658111IPR001356Homeobox domain
CDDcd000863.82E-1558113No hitNo description
Gene3DG3DSA:1.10.10.602.9E-1758111IPR009057Homeodomain-like
PRINTSPR000313.1E-58493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000313.1E-593109IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDNQQLFGSS YVDTRFFAAN GTAQRESQPK ARRRRRRAAR CGGGDGNGWE MDGGGDPKKR  60
RLTDEQAEML ELSFREERKL ETGRKVYLAA ELGLDPKQVA VWFQNRRARH KSKTLEQEFA  120
RLKHAHDAAI LHKCHLENEV SLLIHTHTGV HTNSSSFLHK LTASQVLRLK EKLRATAEEV  180
QRLRSAAGIH ANGGDSAGAV SVCGGSPGSS FSTGTCQQHP GFSGADVLGR DDDLMMCVPE  240
WFFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13139RRRRRRAAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4902331e-172AB490233.1 Hordeum vulgare subsp. vulgare HvHox2 gene for homeodomain leucine zipper protein class 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176255.11e-150homeobox-leucine zipper protein HOX14-like
SwissprotA2YN178e-63HOX14_ORYSI; Homeobox-leucine zipper protein HOX14
SwissprotQ7XI857e-63HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLM7Z5Q90.0M7Z5Q9_TRIUA; Homeobox-leucine zipper protein HOX14
STRINGTRIUR3_10111-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-33homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]