PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_10132-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 1072aa MW: 117672 Da PI: 6.7023

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_10132-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.2	3.2e-23	277	377	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ TRIUR3_10132-P1 277 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WND 367 99****************************9999996.9**********************************************..676 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 + +l+++++ TRIUR3_10132-P1 368 NNQLLLGIRH 377 7777888875 PP
2	Auxin_resp	116.9	1.7e-38	403	486	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k TRIUR3_10132-P1 403 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 486 79*******************************9789****************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.44E-47	264	406	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-40	268	392	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.54E-22	276	369	No hit	No description
Pfam	PF02362	2.6E-21	277	377	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.111	277	379	IPR003340	B3 DNA binding domain
SMART	SM01019	4.5E-23	277	379	IPR003340	B3 DNA binding domain
Pfam	PF06507	1.5E-33	403	486	IPR010525	Auxin response factor
Pfam	PF02309	1.8E-8	935	1024	IPR033389	AUX/IAA domain
SuperFamily	SSF54277	1.37E-6	937	1014	No hit	No description
PROSITE profile	PS51745	25.21	938	1022	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1072 aa Download sequence Send to blast
MPGVPLHVLA PASVAPRRGP AGAGRPRFMF FSFSMDAFFL KHVWLVGMEN NTSFVSKLDE 60 AAAEDGGASL GAEGEVGRCC WERGAALSSQ LLRVPAASRR SWVFLASVAS LDGEKALHVR 120 DAAVPPGKRW YISSHGPLIN SAVQFSTCTP VCISSGLRIV ECADREQRCL NSELWHACAG 180 PLVSLPAVGS RVIYFPQGHS EQVAASTNKE VDAQIPNYPN LPPQLICQLH NVTMHADAET 240 DEVYAQMTLQ PLSPEEQKEP FLPIELGAAS KQPTNYFCKT LTASDTSTHG GFSVPRRSAE 300 KVFPPLDFSL QPPCQELIAK DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS 360 VIFIWNDNNQ LLLGIRHANR PQTIMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR 420 ASPSEFIIPL AKYVKSVYHT RVSVGMRFRM LFETEESSVR RYMGTITTIS DLDSVRWPNS 480 HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT TFPMYPTAFP LRLKRPWASG LPSMHGMFNG 540 RLINVTRIAV YVVLLLYNST KCPFNQVLFC IICAGVKNDD FARYSSLMWL GDGDRGAQSL 600 NFQGVGASPW LQPRMDSPLL GLKPDTYQQM AAAALEEIRT GDPSKQSSAL LQFQQTQNPN 660 GGLNSVYANH VLQQMQYQAQ QSSLQTVQHG HSQYSGNPGF LQSQFQQLHL HNPPAPPQQG 720 HQVIQQSHQE MQQQLSSGCH RISDVDSSMP GSESASQSQS SFYQQNLLEG NNDPSLHLHN 780 GFRNFSSQDS SNLVSLPRTD QLMAPEGWPS KRLAVEPLGH IESRSVQPKH ENVNHQSNMS 840 HFAGTLAPQS ARDSSSVQAY GANVDNQFLS SSFAFQDGMA GARGGSSSGT VSMAIPLLRY 900 SGEDLPPADT LATSSCLGES GTFNSLDNMC GVNPSQDGTF VKVYKSGSPG RSLDITRFSS 960 YYELRSELEH LFGLEGQLED PVRSGWQLVF VDRENDILLV GDDPWQEFVN SVGCIKILSQ 1020 QEVQQMVRGG EGLLSSAPGA RMAQGNVCDG YSGGHDLQNL TGNMASVPPL DY

Sequence ? help Back to Top

Protein Sequence Length: 1072 aa Download sequence Send to blast

MPGVPLHVLA PASVAPRRGP AGAGRPRFMF FSFSMDAFFL KHVWLVGMEN NTSFVSKLDE  60
AAAEDGGASL GAEGEVGRCC WERGAALSSQ LLRVPAASRR SWVFLASVAS LDGEKALHVR  120
DAAVPPGKRW YISSHGPLIN SAVQFSTCTP VCISSGLRIV ECADREQRCL NSELWHACAG  180
PLVSLPAVGS RVIYFPQGHS EQVAASTNKE VDAQIPNYPN LPPQLICQLH NVTMHADAET  240
DEVYAQMTLQ PLSPEEQKEP FLPIELGAAS KQPTNYFCKT LTASDTSTHG GFSVPRRSAE  300
KVFPPLDFSL QPPCQELIAK DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS  360
VIFIWNDNNQ LLLGIRHANR PQTIMPSSVL SSDSMHIGLL AAAAHAAATN SRFTIFYNPR  420
ASPSEFIIPL AKYVKSVYHT RVSVGMRFRM LFETEESSVR RYMGTITTIS DLDSVRWPNS  480
HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT TFPMYPTAFP LRLKRPWASG LPSMHGMFNG  540
RLINVTRIAV YVVLLLYNST KCPFNQVLFC IICAGVKNDD FARYSSLMWL GDGDRGAQSL  600
NFQGVGASPW LQPRMDSPLL GLKPDTYQQM AAAALEEIRT GDPSKQSSAL LQFQQTQNPN  660
GGLNSVYANH VLQQMQYQAQ QSSLQTVQHG HSQYSGNPGF LQSQFQQLHL HNPPAPPQQG  720
HQVIQQSHQE MQQQLSSGCH RISDVDSSMP GSESASQSQS SFYQQNLLEG NNDPSLHLHN  780
GFRNFSSQDS SNLVSLPRTD QLMAPEGWPS KRLAVEPLGH IESRSVQPKH ENVNHQSNMS  840
HFAGTLAPQS ARDSSSVQAY GANVDNQFLS SSFAFQDGMA GARGGSSSGT VSMAIPLLRY  900
SGEDLPPADT LATSSCLGES GTFNSLDNMC GVNPSQDGTF VKVYKSGSPG RSLDITRFSS  960
YYELRSELEH LFGLEGQLED PVRSGWQLVF VDRENDILLV GDDPWQEFVN SVGCIKILSQ  1020
QEVQQMVRGG EGLLSSAPGA RMAQGNVCDG YSGGHDLQNL TGNMASVPPL DY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-157	170	507	51	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368822	0.0	AK368822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2080I14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020168307.1	0.0	auxin response factor 25-like isoform X1
Swissprot	Q2QM84	0.0	ARFY_ORYSJ; Auxin response factor 25
TrEMBL	M7YG27	0.0	M7YG27_TRIUA; Auxin response factor
STRING	TRIUR3_10132-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12712	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.2	0.0	auxin response factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Gao S, et al. CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation. Plant Physiol., 2014. 165(3): p. 1035-1046 [PMID:24808099]