PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10193-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 406aa    MW: 43540.8 Da    PI: 9.2853
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10193-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.33.3e-41170246177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +Cqve+C+adls ak+yhrrhkvCe h+ka+ v+++g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk++
  TRIUR3_10193-P1 170 RCQVEDCKADLSGAKHYHRRHKVCEYHAKASLVAAAGKQQRFCQQCSRFHVLTEFDEAKRSCRRRLAEHNRRRRKPA 246
                      6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-34163232IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.65168245IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-38169248IPR004333Transcription factor, SBP-box
PfamPF031105.4E-31171244IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MMSGGRTNAA ASDDFPFAAM QPPPYVGFEH AGGGGQRHQG AMMYDNFDFA AAAVAFGQFQ  60
DAPHHQMLAL PRSGSGVGGL VPMAPPPMPG MQLQMPPMAM HGHGDVYPAP GMMKREGGGA  120
GDAGRIGLNL GRRTYFSPGD MMAVDRMLMR SRLGGVFGLG FGRAHHQAPR CQVEDCKADL  180
SGAKHYHRRH KVCEYHAKAS LVAAAGKQQR FCQQCSRFHV LTEFDEAKRS CRRRLAEHNR  240
RRRKPAAGST AASSKDSAPP TKKPNAGAIS SSYTADNNTL STTKSTISSN TSAISCLQHG  300
EGRAAAATRP TALTLGAAPE KDDQQQQLRN AMQLHHHQEQ QHFITSLLHN NINNSNILSC  360
SSVSSSTMPS AAAANGEVSD QNNDITNNNG SNNVNNGMHM FEVDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-301712441184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227244KRSCRRRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478780.0KF447878.1 Triticum aestivum squamosa promoter-binding-like protein 20 (SPL20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146778.10.0squamosa promoter-binding-like protein 10
SwissprotA2YFT91e-107SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE81e-107SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLM7YIT80.0M7YIT8_TRIUA; Squamosa promoter-binding-like protein 10
STRINGTRIUR3_10193-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-34squamosa promoter binding protein-like 8