PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10274-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 244aa    MW: 26253.4 Da    PI: 5.8965
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10274-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.81.1e-0740702055
              AP2 20 rdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +d      + k+++lg f+ta+ Aa+a+++a+ k++g
  TRIUR3_10274-P1 40 WD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 70
                     34......45************************997 PP
2AP232.71.8e-10113160152
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkk 52 
                      s+++ V+ +k  g+W+A+I         +k ++lg ++t+ +Aaka+++a++ 
  TRIUR3_10274-P1 113 SRFRSVTLHK-CGKWEARIGQlM----GKKFVYLGLYDTEMDAAKAYDKAALD 160
                      789*******.7******77733....25**********77*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.6671378IPR001471AP2/ERF domain
SMARTSM003803.1E-113484IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-94178IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-114377IPR001471AP2/ERF domain
PfamPF008474.1E-5113161IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-14113171IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-14114171IPR001471AP2/ERF domain
PROSITE profilePS5103213.735114171IPR001471AP2/ERF domain
SMARTSM003802.1E-23114177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKASSHLLPS WGHRLGASYN WRPVDDGIFA AVDGGIFTAW DCGKQVYLGG FDTAQAAARA  60
YDQAAIKFRG VEADINFVLD DYKEDIGKMS MLSKEELVQV LRRQGAGFVR GSSRFRSVTL  120
HKCGKWEARI GQLMGKKFVY LGLYDTEMDA AKAYDKAALD CSGEEAVTNF EPKAAAAVCD  180
GSLGLQVRNA GGGGGDGAMA PRQEQEHLDE AFADVDNTGA EVPGGRSLLH HPAQQHAPDG  240
KVIQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3573930.0AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151062.17e-76ethylene-responsive transcription factor RAP2-7-like
SwissprotA0A0N7KMH07e-71AP24_ORYSJ; APETALA2-like protein 4
TrEMBLM8A4F91e-179M8A4F9_TRIUA; Floral homeotic protein APETALA 2
STRINGTRIUR3_10274-P11e-180(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.28e-56AP2 family protein
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]