PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10644-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 287aa    MW: 31570.6 Da    PI: 6.4043
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10644-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.2e-122771147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  TRIUR3_10644-P1 27 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 71
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.62E-162177IPR009057Homeodomain-like
PROSITE profilePS5129414.182276IPR017930Myb domain
TIGRFAMsTIGR015571.3E-182574IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.6E-62577IPR009057Homeodomain-like
SMARTSM007176.5E-102674IPR001005SANT/Myb domain
PfamPF002494.0E-102771IPR001005SANT/Myb domain
CDDcd001679.73E-82972No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
PPMAVPADAA EDARMKVRKP YTITKSRESW TEPEHDKFLE ALQLFDRDWK KIEAFVGSKT  60
VIQIRSHAQK YFLKVQKNGT GEHLPPPRPK RKAAHPYPQK ASKTAPVASQ AVLPQQPAPP  120
PPPPRDQDGV NVSMDASMVV PSTNANAVVP SWDNALVQPT QVTSAIATNN CSSSIESQSG  180
TWPTSEAVEQ ENVLPQMRAM PDFSQVYNFL GSVFDPDTTG HLQRLKAMDP IDVETVLLLM  240
RNLSVNLINP EFEAHRQLLS SYGSGGDENK PEGMENLGSQ SSHLPSM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3606960.0AK360696.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1123J21.
GenBankAK3769560.0AK376956.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3144K07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178881.10.0protein REVEILLE 8-like isoform X1
SwissprotQ8H0W34e-95RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A3B6RQH80.0A0A3B6RQH8_WHEAT; Uncharacterized protein
TrEMBLA0A446XV010.0A0A446XV01_TRITD; Uncharacterized protein
STRINGTRIUR3_10644-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.28e-82MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]