PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10705-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WOX
Protein Properties Length: 234aa    MW: 25293.7 Da    PI: 9.774
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10705-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.6e-2093152357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      +R+++++eq+++Le+l++   r+p+ +++e+++++l    +++ ++V++WFqN++a+e++
  TRIUR3_10705-P1  93 TRWNPSAEQIKVLEALYRGgMRTPNSAQIERITEELgrhgRIEGKNVFYWFQNHKARERQ 152
                      8*****************99**************************************97 PP
2Wus_type_Homeobox114.94e-3792154365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +tRW+P++eQik+Le+ly+ G+rtPn+++i+rit+eL ++G+ie+kNVfyWFQN+kaRerqkq
    TRIUR3_10705-P1  92 TTRWNPSAEQIKVLEALYRGGMRTPNSAQIERITEELGRHGRIEGKNVFYWFQNHKARERQKQ 154
                        69***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.3E-890157IPR001356Homeobox domain
SuperFamilySSF466895.13E-1392158IPR009057Homeodomain-like
CDDcd000862.96E-693154No hitNo description
Gene3DG3DSA:1.10.10.602.4E-893152IPR009057Homeodomain-like
PfamPF000468.8E-1893152IPR001356Homeobox domain
PROSITE profilePS5007110.15598153IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKVHHSHVAS YLEKAASASS SPATAPSTSP PSELFPFGAF QCLRPLAPKI SLPDQPKKLV  60
APPDVLGRVR SATKLLSCTV RNHTVQVPVG GTTRWNPSAE QIKVLEALYR GGMRTPNSAQ  120
IERITEELGR HGRIEGKNVF YWFQNHKARE RQKQKRAALL TLSTLDSSSL PATATKDGAG  180
DKKEACDDAV TSCKRQCRTW GDGHGDAAAE VAAEGCTENV TLELFPLRPQ GKAA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL4420071e-81AL442007.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete sequence.
GenBankAL6066351e-81AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence.
GenBankAL6066921e-81AL606692.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence.
GenBankAP0149601e-81AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-81CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankJF8361591e-81JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161616.11e-158WUSCHEL-related homeobox 4-like
SwissprotQ25AM21e-100WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV31e-100WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLM7ZDD11e-173M7ZDD1_TRIUA; WUSCHEL-related homeobox 4
STRINGTRIUR3_10705-P11e-173(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.19e-38WUSCHEL related homeobox 4