PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10707-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 312aa    MW: 34351.6 Da    PI: 6.3636
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10707-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.95.7e-1470120155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+ +++a+ k +g
  TRIUR3_10707-P1  70 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARSYDRAAIKCNG 120
                      89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.69136IPR001471AP2/ERF domain
SMARTSM003803.6E-4342IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-6637IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-8736IPR001471AP2/ERF domain
CDDcd000185.16E-2670130No hitNo description
SuperFamilySSF541711.11E-1770129IPR016177DNA-binding domain
PfamPF008474.5E-1070120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1671128IPR001471AP2/ERF domain
PROSITE profilePS5103216.18671128IPR001471AP2/ERF domain
SMARTSM003801.3E-3371134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAWQIAGGFD TAHAAARAYD RAAIKFRGME ADINFSLEDY DDIKQMGNLT KEEFVHVLRR  60
QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEEEAARS YDRAAIKCNG  120
KDAVTNFDPS TYAEEFEPAA STGDAEQNLD LSLGSSGGSN KRGSLDGGGG DDEGAAGSDQ  180
RVPMAFELDW QTAAAAARST KAKFDQNSTH RQMPPPALQA SHMAFSPRQH QVGAELAPEE  240
RLPLPGQTHL SLPARDHQHQ LHHRAPRSST IHGEDRSTEP GEITEEHGRF LRAHNHYHHN  300
STGTETETET GC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3601490.0AK360149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111J04.
GenBankAK3719530.0AK371953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143N17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161606.11e-131AP2-like ethylene-responsive transcription factor TOE3
SwissprotB8AVJ91e-111APL25_ORYSI; APETALA2-like protein 5
TrEMBLM8AC110.0M8AC11_TRIUA; Floral homeotic protein APETALA 2
STRINGTRIUR3_10707-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.28e-72AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]