PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10746-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 666aa    MW: 76405.2 Da    PI: 7.7687
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10746-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.35.4e-2383175290
             FAR1   2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      fYn+YA  +GF +r+++s+++  k ++  ++++fvC keg+++++k+   ++k++r+r + r gC a+++v ++  +kw++tkl+leH+H ++
  TRIUR3_10746-P1  83 FYNAYALGLGFGIRVARSRSErrKGTEVLVMKRFVCMKEGHHKKKKDVdsSNKKKRKRLSIREGCPAMMEVVRRGPEKWVITKLVLEHTHVIV 175
                      9*************99988874355667899*********9999887666899999**********************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-2083175IPR004330FAR1 DNA binding domain
PfamPF105512.5E-24260351IPR018289MULE transposase domain
PROSITE profilePS509669.384544576IPR007527Zinc finger, SWIM-type
PfamPF044342.4E-7546574IPR007527Zinc finger, SWIM-type
SMARTSM005750.0071551578IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MEFSSSEDHD LVEDFMDVED DTGTTDVDQG TSVMSSQIHC IDPSEGSMST AVNELLPAAD  60
ELGKNAEPYL GMEFTSDAAA RAFYNAYALG LGFGIRVARS RSERRKGTEV LVMKRFVCMK  120
EGHHKKKKDV DSSNKKKRKR LSIREGCPAM MEVVRRGPEK WVITKLVLEH THVIVSPDKV  180
REVQLLRLSG KEHADQLQEA RRNVFGDTGA SGLFTYLMRR QSENSGFFYN VQVDGRNCLR  240
NAVWVDARSK MSYKYFGDAV YFDTTYTQNE NMLPFAAFTG MNHHGDCVVF GCALILDKTE  300
SSYAWIFETW LTAMDKRLPF SFTTDEGKTM TEAVAKVFPQ CFHRLCRWRV LSKCKKKLSD  360
VYMRFPELHN ELKRCVNECD TVPVFDMFWG SILDKYGLRE NTWLQSLFEA RHKWVPAYLT  420
SSFFAELSLT RRAETISGFY RNNFSTRAPL LSFITTFDQH IDRLYMNEAQ KDLALFPPEQ  480
LLKTNSILEK QAASIYTRAA FEFFQTELIE SLHHYAVKVE ESPYEAKYYV ERDGDPPTRH  540
TVVYNVAEKK AWCDCCRFAF SAILCRHVLG VFILADIDMI PEPCITKRWT KKAKTGPVFV  600
GRILEDENRH TDSVTSRFSD LVRDTMRCGE KGALSEGSFK FAKEVLRKAY REIDKLTKAG  660
PQQVGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125139KKKDVDSSNKKKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3764420.0AK376442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3124E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185207.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLT1M0150.0T1M015_TRIUA; Uncharacterized protein
STRINGTRIUR3_10746-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-116FAR1-related sequence 5