PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10777-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 152aa    MW: 16657 Da    PI: 10.2652
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10777-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-1622624888
                     EEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3 48 vkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                     ++++y+++s++yvltkGW++Fvk++gL +gD vvF+++ + 
  TRIUR3_10777-P1 22 FRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVVFYRSASG 62
                     8999********************************66433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.545174IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-152071IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-182177IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-122259No hitNo description
PfamPF023621.5E-132264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MVASKVTDVG PSGCNLLFTT GFRYSYWNSS QSYVLTKGWS RFVKEKGLHA GDAVVFYRSA  60
SGNNQFFIDC KLRSMTTTTT FVNATAATTL PAPVMRTVRL FGVDLLTAPA LRHAPEHEDY  120
GMAKTNKRFV DASVAAATPA HAVWKKREQG IA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-19227466118DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719411e-114AK371941.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143K20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159691.17e-65AP2/ERF and B3 domain-containing protein Os05g0549800-like
SwissprotQ6L4H49e-33Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLT1M0451e-109T1M045_TRIUA; Uncharacterized protein
STRINGTRIUR3_10777-P11e-110(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2906334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-23related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]