PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10874-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 165aa    MW: 18560 Da    PI: 7.406
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10874-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.19.4e-36351272103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+ +++++sw e+  +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll 
  TRIUR3_10874-P1  35 FLTKTYQLVDDPCTDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLLA 119
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+ks+
  TRIUR3_10874-P1 120 EIHRRKSS 127
                      *****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.0E-5731124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3732124IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.16E-3432124IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-3135124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-203558IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-208698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MAFLVERCGE MVVSMEMGSG AAGAHGAGGP VPAPFLTKTY QLVDDPCTDH IVSWGEDDAT  60
FVVWRPPEFA RDLLPNYFKH NNFSSFVRQL NTYGFRKIVA DRWEFANEFF RKGAKHLLAE  120
IHRRKSSQPP PPSMVPHQAA YHHHYHLGNT FSPPPPPPPA GHEQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-242612419129Heat shock factor protein 1
5d5v_B8e-242612419129Heat shock factor protein 1
5d5v_D8e-242612419129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085500.0KF208550.1 Triticum aestivum heat shock factor B4a (HsfB4a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186930.13e-87heat stress transcription factor B-4b-like
SwissprotQ7XHZ03e-81HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLT1M0E11e-120T1M0E1_TRIUA; Uncharacterized protein
STRINGTRIUR3_10874-P11e-121(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-62heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]