PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_10947-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 230aa    MW: 26325 Da    PI: 7.7881
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_10947-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.7e-161422221199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       ++  l +p +f  eh     +++ ++l de+ ++++v +  r +s++  l +GW+eF+ +n+L egD +vF+l++r  f  +v +fr+
  TRIUR3_10947-P1 142 QSLTSLHIPAQFSMEHLP--DNGMRMVLVDEEEEEFKVSY--RPHSSS--LVAGWSEFAIDNELVEGDCLVFQLIKRALF--KVYIFRA 222
                      4445589*****999953..36899***************..999988..889**********************98888..9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-21129223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-20130223IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.603132223IPR003340B3 DNA binding domain
CDDcd100172.22E-21134221No hitNo description
SMARTSM010191.1E-15136223IPR003340B3 DNA binding domain
PfamPF023621.6E-13140222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAEANSYEEQ RRRQVEENKR KLEELRLHHL PAAVRGAAVK PRLARQIRAT LLAVPLLLLV  60
WLVSQKRKAP KPRGAADDAP PRRSGRIATL PEQPDYRDNL GTGKPRQQKE VKPDHAYAIA  120
KAEELQDELG SDYPTFVKPM PQSLTSLHIP AQFSMEHLPD NGMRMVLVDE EEEEFKVSYR  180
PHSSSLVAGW SEFAIDNELV EGDCLVFQLI KRALFKVYIF RASSYYENEH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743460.0AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158478.11e-137B3 domain-containing protein Os06g0194400-like
SwissprotQ69V361e-67Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLT1M0L31e-168T1M0L3_TRIUA; Uncharacterized protein
STRINGTRIUR3_10947-P11e-169(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-28B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]