PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11057-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 677aa    MW: 76795.9 Da    PI: 7.1012
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11057-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.11.2e-1759152290
             FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                       Y+ +Ak++GFs+r+++++ +    +  t+r fvC + g++  +  +   k++r+r+++r+gC+a l++ ++      +w+vt +++ HnHel 
  TRIUR3_11057-P1  59 LYSGFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKPFDdGAKQQRNRKSSRCGCQAYLRIGRDAgagGLEWRVTGFSNYHNHELL 152
                      79************9998877356667999*********998887664678899*****************99877789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-1559152IPR004330FAR1 DNA binding domain
PfamPF105512.2E-14275361IPR018289MULE transposase domain
PROSITE profilePS509669.977551587IPR007527Zinc finger, SWIM-type
PfamPF044344.4E-8559586IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
GDPLEQRVSP MERPSSGEEG EGDSPNETRI SPETAAAEAD DSVPYIGQRF LTHEAAYELY  60
SGFAKQCGFS IRRHRTEGKD GVGKGLTRRY FVCHRAGNTP AKPFDDGAKQ QRNRKSSRCG  120
CQAYLRIGRD AGAGGLEWRV TGFSNYHNHE LLRQDEVRFL PAYRVISESD RDRILVFAKS  180
GITVQQMMRI MELEKCVQPG SLPFTEKDVR NLIQSFRRFE QEEESVDLLQ MCRNVKEKDP  240
NFKYDFTKDA NNCVENIAWS YASSIQSYEV FGDAVVFDTI HRLTSIDMTL GIWIGMNNHG  300
MPCFFSCVLL REGNLQSFTW ALQVFLNFMN RKAPQTILTD QNMYLKEAVQ KELPNTKHAL  360
SIGLIASRFL SWFNAVLGRH YNDWENEFYR LHNMESTMDF DLGWSDMVSC YGLHGNRHIA  420
SLFASRKLWA SPYLRGHFLA GLAALPGISK IKDFIQRLLS AQTCLSCFIE QVAVVVDYKD  480
QAGEQQIVQQ NSENTILKTA APVEGHAAAV FTPYAFYKLQ DELVEAAHYA YFHVEGNAFL  540
VRHHTKTDGG CNVTWNQKEE LLSCSCQMFE SSGILCRHAL RVLTTLNYSQ IPDHYLPVRW  600
HRTQPQPSKS LIGAPDHGRS YERVKALQSM VSVLVSEAGK SEERMDLATQ EVSVLLSRIR  660
QQPVVANVSG DGVHQQR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2487600.0AK248760.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf2n05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180634.10.0protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLT1M0W90.0T1M0W9_TRIUA; Uncharacterized protein
STRINGTRIUR3_11057-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151711516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]