PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11075-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 309aa    MW: 33976.5 Da    PI: 8.592
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11075-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.54.7e-101050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      i+nks r  t+  R + +  KA E+S+LC+a+++v+++ +
  TRIUR3_11075-P1 10 YIKNKSSRRRTLDTRMKNLASKAREVSILCNAKACVLVYDE 50
                     59************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.689152IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-11160IPR002100Transcription factor, MADS-box
CDDcd002663.43E-16261No hitNo description
SuperFamilySSF554553.01E-15386IPR002100Transcription factor, MADS-box
PfamPF003192.3E-81152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MARKKIALQY IKNKSSRRRT LDTRMKNLAS KAREVSILCN AKACVLVYDE GNAAPKVYPS  60
HPEAVDILNR YKTMADGRFK KTVNQEDFLS QRLSKLQVKE NKVRDPEIRI LLHKAMLGSD  120
LPDLKVDELT IVSSRLEEIL KSVGQSIAKI SGQPPVLQPQ VPYIPDNMDM GGSSAMYLAS  180
QPAPYVTNNM DMGSFAMNQQ PSPTPYVTDN MHMGSPTMYQ VPPQHEGWLD KVRSGRNLDA  240
LAHNGYNTAG HDGADTSTSV GYSTNWHDGP GTSANTGSSS GMKSLDVGFG WQLGGVDPEE  300
SSWSLFPPM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170132.10.0agamous-like MADS-box protein AGL80
TrEMBLM8AHP20.0M8AHP2_TRIUA; Agamous-like MADS-box protein AGL80
STRINGTRIUR3_11075-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.34e-20M-type_MADS family protein