PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11677-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family BBR-BPC
Protein Properties Length: 385aa    MW: 42563 Da    PI: 9.3744
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11677-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3698.5e-11313281298
        GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 
                      md+ g+re  r+++  y+        p++++k++ +++l+++++erd++i er++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l+a
  TRIUR3_11677-P1   1 MDNLGHREngRQRPdPYKalhtqwmmPQRQMKDHHSMNLLALLSERDTAIMERDHALAEKKAAMAERDMAFAQRDSAMAERNAAIVERDNALAA 94 
                      99999998899999888899999999889***************************************************************** PP

        GAGA_bind  84 lllvensla...salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaee.akekkkkkkrqrakkpkekkak.. 165
                      l+l++++     s ++++ ++l+g+k+ ++++q+ +      ql+ds+++ +re+++++a+pi++a+ + a ++kk+kk++++++p+++ +   
  TRIUR3_11677-P1  95 LELARTNGFnmnSGNGFNPGSLNGAKNFHHHDQQPHaqsspLQLADSPYDhAREMHISDAYPISTAPVTaAGKAKKPKKNSSQASPLKRPSGvl 188
                      *9998875545588889999***********99877789999********9*************9976516789999***********999988 PP

        GAGA_bind 166 kkkkksekskkkvkkesader.......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252
                      +k+kk   ++++  ++++ e+       +k+e+k++dl+ln+vs+Des++P+P+CsCtG+lrqCYkWGnGGWqS+CCt+++S+yPLPv++++r+
  TRIUR3_11677-P1 189 RKTKKAGGDWRDAGMSGVGEDparaaseMKNEWKDQDLGLNQVSFDESSMPAPACSCTGVLRQCYKWGNGGWQSSCCTMSMSMYPLPVMPNKRH 282
                      7777788899999998877556788888****************************************************************** PP

        GAGA_bind 253 aRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfv 298
                      aR++grKmS++af+klL++LaaeG+dls  vDLkdhWAkHGtn+ v
  TRIUR3_11677-P1 283 ARMGGRKMSGSAFTKLLSRLAAEGHDLSASVDLKDHWAKHGTNRIV 328
                      *******************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.2E-931328IPR010409GAGA-binding transcriptional activator
SMARTSM012268.4E-1451328IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDNLGHRENG RQRPDPYKAL HTQWMMPQRQ MKDHHSMNLL ALLSERDTAI MERDHALAEK  60
KAAMAERDMA FAQRDSAMAE RNAAIVERDN ALAALELART NGFNMNSGNG FNPGSLNGAK  120
NFHHHDQQPH AQSSPLQLAD SPYDHAREMH ISDAYPISTA PVTAAGKAKK PKKNSSQASP  180
LKRPSGVLRK TKKAGGDWRD AGMSGVGEDP ARAASEMKNE WKDQDLGLNQ VSFDESSMPA  240
PACSCTGVLR QCYKWGNGGW QSSCCTMSMS MYPLPVMPNK RHARMGGRKM SGSAFTKLLS  300
RLAAEGHDLS ASVDLKDHWA KHGTNRIVDE IERSKNNSSS IASGCTNEHL SLGVETSHQP  360
LLLTDGKKWR WQNNARLLNV YLELL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745600.0AK374560.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3069B24.
GenBankAK3748700.0AK374870.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3078K14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158993.10.0barley B recombinant-like protein D
RefseqXP_020158994.10.0barley B recombinant-like protein D
SwissprotQ5VSA80.0BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLM8ARK50.0M8ARK5_TRIUA; Uncharacterized protein
STRINGTRIUR3_11677-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.15e-95basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]