PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11727-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 749aa    MW: 85684.8 Da    PI: 6.6104
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11727-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.7e-1712107299
                      EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      fkvl     ++ +rl +p++f++ +      g++ ++++ +l+ ++g++W v+l  +k ++ ++lt+GW +Fv +n L+e +f++F++d++++f
  TRIUR3_11727-P1  12 FKVL--VGDFA-RRLEIPRDFLSYIpevglRGSNISPVQAMLKRSEGKTWVVEL--EKVDCCVFLTTGWTKFVVDNSLREYEFLLFRHDRKMDF 100
                      5555..34444.469*******555***9955667999****************..*******************************9999999 PP

                      ..EEEEE-S CS
               B3  91 elvvkvfrk 99 
                        +v+vf +
  TRIUR3_11727-P1 101 --MVSVFGR 107
                      ..9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-184110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-217114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.7888108IPR003340B3 DNA binding domain
CDDcd100173.09E-159105No hitNo description
SMARTSM010196.9E-1611108IPR003340B3 DNA binding domain
PfamPF023621.6E-1312107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MEEDEEGRPR FFKVLVGDFA RRLEIPRDFL SYIPEVGLRG SNISPVQAML KRSEGKTWVV  60
ELEKVDCCVF LTTGWTKFVV DNSLREYEFL LFRHDRKMDF MVSVFGRNAC EKAVRSSGSA  120
AQATESLERK LPCDMFPTCK RGHSGDELTK ITNNLRQSHS LVMIPDQSDT KIFPFQGSTQ  180
GNGHISPQSF ADIHRHEVDG LKDELKIYLL LKVPMDDDKA KVIAEVMSRL HVDRVTVDLF  240
CAALCLYKWD SDAAAEVLNT CRGKPQIPNQ FLKQKLVLQF DFIKRELRHF FPTGDDCPPQ  300
IRDSTESSLE EPNLSTQALQ NYLPVVKSKL VDDHEPCDLS YKQKRRIVKS RSQQISETPR  360
RSPRLAHLKN SGGSIESGLK EKPEVLESPP SSTIDQVEHR AGHACLLYEK PDHVFKGDRH  420
HAIGSLSQDF KRLKRTRGEV GLSEKPQHNQ ENEENIDQGN NGEILEEQID RNSAETSESF  480
MESDWIDSSP PTKSNSSSMI INELCLTWKP SVHTNSLENV LLHIQRDNFM KTITHVQGII  540
RSFPSDLHCA AIIEAVVQKE ILKWDSCLQD VDAQRVVIAL LEHAKKIKEI HNFNMESRKE  600
EFSTKLQDQL KWQLKELESV CTSLEFDYKK VTCDGNIAVS TSQEQKKKLH ALQDEIKGLQ  660
QSMMMEDEIQ KLVHQVAEHE SLVQKSLMER VRVKTVLKSY KQVLVEVKER LASDELGLID  720
VNALVKVEMD NLRKEIEISK GRLLNIIFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165473.10.0B3 domain-containing protein Os03g0120900-like
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLT1M2Q10.0T1M2Q1_TRIUA; Uncharacterized protein
STRINGTRIUR3_11727-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.18e-14B3 family protein