PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11841-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 185aa    MW: 19761.6 Da    PI: 9.3076
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11841-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.72.3e-44251241100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+C+++Cv+apyfp+ +p++fa vhk+FGasn++kll+++p e+r da+sslvyeA+ar+rdP+yG+vg i++lq+q+e+l+++l
  TRIUR3_11841-P1  25 PCAACKLLRRRCSPGCVFAPYFPSGEPHRFASVHKVFGASNISKLLQEIPAEHRGDAVSSLVYEANARVRDPIYGCVGAITSLQRQVESLQTQL 118
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      al+++e
  TRIUR3_11841-P1 119 ALAQAE 124
                      **9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.35124125IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-4325122IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGSKAIKKKR RGMKEVVAAG AGVSPCAACK LLRRRCSPGC VFAPYFPSGE PHRFASVHKV  60
FGASNISKLL QEIPAEHRGD AVSSLVYEAN ARVRDPIYGC VGAITSLQRQ VESLQTQLAL  120
AQAEIVRLRM ANAYGAAHHN GGGSTASGSP SSMSSPTKTA DHHDMAVDQS GVMELELECS  180
RFWAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-50201277113LOB family transfactor Ramosa2.1
5ly0_B8e-50201277113LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1610KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181605.12e-88LOB domain-containing protein 4-like
SwissprotQ8LBW36e-56LBD12_ARATH; LOB domain-containing protein 12
TrEMBLM8A3H61e-134M8A3H6_TRIUA; Uncharacterized protein
STRINGTRIUR3_11841-P11e-135(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.16e-57LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]