PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12103-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 233aa    MW: 27033.3 Da    PI: 8.1224
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12103-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.4e-18123216199
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      f+k +t++ ++k + + +pk+f  e+        +  ++l d+   ++ + ++  +++++y++ kGW++F+  ++L +gD +vF++++r +f  
  TRIUR3_12103-P1 123 FVKPMTHNCASKAAEMKIPKHFS-EYlpA----HDEGVVLVDKADDEFHMMYNAHRQGRHYYFHKGWRGFAANHDLAVGDCLVFHMTERAKF-- 209
                      8999*999**************8.67443....2334***************88888888*************************7765666.. PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v +fr+
  TRIUR3_12103-P1 210 KVYIFRA 216
                      9**9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-19119217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-19120217IPR015300DNA-binding pseudobarrel domain
CDDcd100179.57E-24121215No hitNo description
SMARTSM010193.2E-11123217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534123217IPR003340B3 DNA binding domain
PfamPF023625.3E-16123216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAESNSYEEQ RRRQMEENRR KLEELRLHHL SAAVREAAAR PKPNPKPRPK RKAPEPGEIR  60
RSGRVAGLPE QPSYLEGAGQ RDYRGVYEAY AVWKGPTEEE RAGAIAKAEE LQRRIHRIRC  120
PAFVKPMTHN CASKAAEMKI PKHFSEYLPA HDEGVVLVDK ADDEFHMMYN AHRQGRHYYF  180
HKGWRGFAAN HDLAVGDCLV FHMTERAKFK VYIFRANPDY ESDQTSDDSE DEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148833.11e-152B3 domain-containing protein Os06g0194400-like
SwissprotQ69V363e-61Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLT1M3Q91e-172T1M3Q9_TRIUA; Uncharacterized protein
STRINGTRIUR3_12103-P11e-173(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4911922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-18B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]