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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
TRIUR3_12142-P1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family |
C2H2 |
| Protein Properties |
Length: 330aa MW: 35641.4 Da PI: 9.0261 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| TRIUR3_12142-P1 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22.6 | 2.7e-07 | 141 | 163 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C+ Cgk F+r nL+ H+r H
TRIUR3_12142-P1 141 HYCQVCGKGFKRDANLRMHMRAH 163
68*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 330 aa
Download sequence Send
to blast |
MFPDAGASPY FLQNQQQLFH GMNGIGVDAA FPGDGGGLAV PDSTHRSTLL YNLSVLKDKV 60
QQLEPLVGHG HVVDPVVPGA SAVVQEIIAA ATSMLYALQH PYVLGALTTS GNHAATPEGP 120
TAVDTAIIEL DAAELLAKYT HYCQVCGKGF KRDANLRMHM RAHGDEYKSK AALANPTTRL 180
FATSGEDAAA GRPRNSKYSC PQDGCRWNRR HAKFQPLKSV ICAKNHYKRS HCPKMYVCNR 240
CNRKHFSVLS DLRTHEKHCG DHRWICSCGT TFSRKDKLAG HVSLFAGHQP VAPLAPGSGR 300
HGKRSSLLSP SSDDLAGNCT NTGFSITPTT
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK063290 | 1e-118 | AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence. |
| GenBank | AP004587 | 1e-118 | AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10. |
| GenBank | AP005544 | 1e-118 | AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01. |
| GenBank | AP014964 | 1e-118 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012616 | 1e-118 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
