PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_12316-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 719aa MW: 80274.2 Da PI: 10.4101

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_12316-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.9	5.4e-21	589	677	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 f+ eY+ ++GF+vrk+ ++ +k +g+ t+ +fvCs+eg r++ +++ ++ ++ raetrt+C+ ++++++++ +++evt++el+HnH l+ TRIUR3_12316-P1 589 FWVEYGGHIGFDVRKRCTNLNKFDGKATSCRFVCSNEGIRRKGQTD-REPKHFRAETRTNCRVQMVIRLDRaAENYEVTDVELKHNHYLQ 677 9***************************************9999.999999**************9*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-16	589	676	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005840	Cellular Component	ribosome

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence Send to blast
MASLTLSSSP TGRREGKIGE EGGRSTTTGQ VRRHAQTRRR RAPLLREIRS VGAATLSFSG 60 RRPSSAQAAP IPSERPRRRT QPRTGPAAME GQVSWSVSFF SMDMEIPPWK AWSLMRFGSS 120 PASLPYARRQ LHHLQDGLLL LHGGVAAAPT LVPADAMEDT FKSETVAFPD HVVRVLPSFP 180 PGTPLSCCSD AMDGHMLPYT SVSHSIGVVV LLGDQSLFAR YLLGAGTNTW DKIKMRVHKK 240 VIDLTSSSDD IKQITWIAMD RSSCVITSRS SYYGSMDHLL LGQYRCKGDK GFIVPSKVHG 300 GRLGLRPWRL PLVLLLCDRG GFVRHQLQNS YGGRVHGRRA TAMVVVLRSW PSSHGYGGRA 360 AFMAMSGQGL VSLHNDEADS GYSTWYHCVM CMFGSSLCSV IYTYANAWSH RLRPALQCQR 420 WLQTLKVKSS IGGLNPESAC HDLSQDKKSK SHEAPFRRTF LLKLLTQLVV QTTHHNYLES 480 HNPFLMERRM DLQAWRQRPA SKLVRTASFA GRKPRACWRS AEPILAAGHG CFPGLAKIAG 540 LPSNSTVKAW KLTLASSKSE NLGCAMTEIS KRIPQVGMRF RDSHEAWMFW VEYGGHIGFD 600 VRKRCTNLNK FDGKATSCRF VCSNEGIRRK GQTDREPKHF RAETRTNCRV QMVIRLDRAA 660 ENYEVTDVEL KHNHYLQLPQ TRHLLVACCR VLDGNNKFAI TIGSLHGDLL FEEEHIVIG

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence Send to blast

MASLTLSSSP TGRREGKIGE EGGRSTTTGQ VRRHAQTRRR RAPLLREIRS VGAATLSFSG  60
RRPSSAQAAP IPSERPRRRT QPRTGPAAME GQVSWSVSFF SMDMEIPPWK AWSLMRFGSS  120
PASLPYARRQ LHHLQDGLLL LHGGVAAAPT LVPADAMEDT FKSETVAFPD HVVRVLPSFP  180
PGTPLSCCSD AMDGHMLPYT SVSHSIGVVV LLGDQSLFAR YLLGAGTNTW DKIKMRVHKK  240
VIDLTSSSDD IKQITWIAMD RSSCVITSRS SYYGSMDHLL LGQYRCKGDK GFIVPSKVHG  300
GRLGLRPWRL PLVLLLCDRG GFVRHQLQNS YGGRVHGRRA TAMVVVLRSW PSSHGYGGRA  360
AFMAMSGQGL VSLHNDEADS GYSTWYHCVM CMFGSSLCSV IYTYANAWSH RLRPALQCQR  420
WLQTLKVKSS IGGLNPESAC HDLSQDKKSK SHEAPFRRTF LLKLLTQLVV QTTHHNYLES  480
HNPFLMERRM DLQAWRQRPA SKLVRTASFA GRKPRACWRS AEPILAAGHG CFPGLAKIAG  540
LPSNSTVKAW KLTLASSKSE NLGCAMTEIS KRIPQVGMRF RDSHEAWMFW VEYGGHIGFD  600
VRKRCTNLNK FDGKATSCRF VCSNEGIRRK GQTDREPKHF RAETRTNCRV QMVIRLDRAA  660
ENYEVTDVEL KHNHYLQLPQ TRHLLVACCR VLDGNNKFAI TIGSLHGDLL FEEEHIVIG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M7ZME6	0.0	M7ZME6_TRIUA; 40S ribosomal protein S20
STRING	TRIUR3_12316-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.2	7e-10	FAR1 family protein