PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12326-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 119aa    MW: 12917.5 Da    PI: 9.4631
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12326-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-053050323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C +C++ F+++  L+ H++ H
  TRIUR3_12326-P1 30 CVYCDRKFRSSQALRGHQNAH 50
                     ******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-92465No hitNo description
Gene3DG3DSA:3.30.160.607.7E-42754IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4892855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803052IPR007087Zinc finger, C2H2
PfamPF121718.0E-53052IPR022755Zinc finger, double-stranded RNA binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
TSQERAQLGL ELTLTTMVPA PGTPDGFFLC VYCDRKFRSS QALRGHQNAH KHERAARRRQ  60
DRAVAAVMQA QDVLCSVSAV RKAGKAVADS VRKQEDPSGG NEGGSSSERG HEVDLSLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152481.17e-39zinc finger protein 2-like
TrEMBLT1M4C52e-81T1M4C5_TRIUA; Uncharacterized protein
STRINGTRIUR3_12326-P13e-82(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.14e-08zinc finger protein 4