PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_12327-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 232aa MW: 25537.4 Da PI: 6.2823

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_12327-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00072	153	173	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C ++F+++ L H++ H TRIUR3_12327-P1 153 CVYCYRRFRTSQALGGHQNAH 173 ******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.89E-5	150	178	No hit	No description
Pfam	PF13912	2.6E-5	151	175	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.637	151	178	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	153	173	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEPAYRAIAS AIGSAPSHWH SSLHAPSTSP IGVHRSTYEH CILRDEEGTR TVLEQKDTRE 60 SNETAMERTS IRDALNINSA INWDEVDDQH DGHALNMHYM YVFEKSAICE YDTQPPGAST 120 MEQASSAQAE LSLELTLAAD VGVVPAEAGF FLCVYCYRRF RTSQALGGHQ NAHKKERAVA 180 KRRRDAAAAM RPSPARKAAA RMPEEPAGGV MAHKDGSSCR ESDPELDLSL RL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M7Z0J4	1e-172	M7Z0J4_TRIUA; Zinc finger protein KNUCKLES
STRING	TRIUR3_12327-P1	1e-173	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274