PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12483-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 159aa    MW: 17669.3 Da    PI: 10.1733
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12483-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.86.3e-51111381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      lppGfrFhPtdeelv++yL++k+ g ++ +  vi+evd+yk+ePw+Lp+k+++   + kewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+
  TRIUR3_12483-P1  11 LPPGFRFHPTDEELVMYYLCRKCGGLPIAA-PVIAEVDLYKFEPWRLPEKAAGggaDAKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKP 103
                      79*************************999.89***************64433343667*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v s   + v +kk Lvfy g+ pkg+kt+W+mheyrl
  TRIUR3_12483-P1 104 VGS--PRPVAIKKALVFYAGKPPKGVKTNWIMHEYRL 138
                      *99..779***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-558145IPR003441NAC domain
PROSITE profilePS5100553.94911159IPR003441NAC domain
PfamPF023651.1E-2612138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDHGFDGALQ LPPGFRFHPT DEELVMYYLC RKCGGLPIAA PVIAEVDLYK FEPWRLPEKA  60
AGGGADAKEW YFFSPRDRKY PNGSRPNRAA GTGYWKATGA DKPVGSPRPV AIKKALVFYA  120
GKPPKGVKTN WIMHEYRLAD VDRSAAARKK SNNALRVTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-65613810140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3575980.0AK357598.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163238.11e-110NAC domain-containing protein 71-like
SwissprotQ53NF72e-92NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLM7ZD181e-113M7ZD18_TRIUA; NAC domain-containing protein 71
STRINGTRIUR3_12483-P11e-114(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118043039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.18e-80NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sperotto RA, et al.
    Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.
    J. Plant Physiol., 2010. 167(17): p. 1500-6
    [PMID:20580124]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]