PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_12909-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 468aa    MW: 51339.9 Da    PI: 8.6519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_12909-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00146789123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C k F++   L  H+++H
  TRIUR3_12909-P1 67 HVCNKCYKNFPSGRALGGHMSLH 89
                     79******************998 PP
2zf-C2H219.62.4e-06129150223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C+ C+k+Fs  ++L++H+r H
  TRIUR3_12909-P1 129 QCQLCSKVFSACDSLRKHMREH 150
                      7*******************99 PP
3zf-C2H2156.9e-05382404123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ CgksF + s L  H+r H
  TRIUR3_12909-P1 382 HQCNACGKSFGSGSALGGHMRWH 404
                      79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.4E-86791IPR007087Zinc finger, C2H2
SMARTSM003552.56789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM003550.034128150IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45128155IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-4129151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.8E-4129150IPR007087Zinc finger, C2H2
SuperFamilySSF576672.81E-10129150No hitNo description
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
SuperFamilySSF576672.81E-10377404No hitNo description
Gene3DG3DSA:3.30.160.607.2E-6380404IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-7381405IPR007087Zinc finger, C2H2
SMARTSM003551.9382404IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.803382409IPR007087Zinc finger, C2H2
PROSITE patternPS000280384404IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MARWADTARP IEARLIHGAC RAAIKPSLAS PEQSETAPPG SRDRNSSLQC IFAMVLDMAP  60
RGRSPKHVCN KCYKNFPSGR ALGGHMSLHW RKVKQPKGTP SPPATVVDLN VSLLSPSDEE  120
ILLWFSGTQC QLCSKVFSAC DSLRKHMREH GEKNVLSKPV EEAAGLMEAR AIAGGGCNVL  180
LSPVKRKRSK RGAPPLKFNE MDAAASLLLL SEHSSKISAN EDCYTEVMDS LPPNVSKDVK  240
LNAFDHQLVR SAEFKKPKGC KCSSYDICYG QCVMDTNLIP NVAKEKTSIP NIAKNSACED  300
CFGQCEKDSS LIPNVDKKER SLMANIPEKD NTLISIVLEE VELNVLDHVL AGDAELRKKQ  360
RTDNSVEMKC ADLSAAVKVK RHQCNACGKS FGSGSALGGH MRWHLPRSND RRHGFAESPD  420
SVVMKEQKQK LELGAKFLDL RLPGLTDITT FSGLKSEPEP WRVASSVH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496280.0AK249628.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf40p20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164841.10.0uncharacterized protein LOC109750291
TrEMBLM7ZWK30.0M7ZWK3_TRIUA; Uncharacterized protein
STRINGTRIUR3_12909-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.14e-08C2H2-like zinc finger protein