PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_13576-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 406aa    MW: 45048.1 Da    PI: 9.1568
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_13576-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.81.2e-104571127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C +++rtG C++G +C+F+H++
  TRIUR3_13576-P1 45 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 71
                     5789*********************97 PP
2zf-CCCH38.22.4e-1292116327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  TRIUR3_13576-P1  92 QPECQYYLKTGTCKFGPTCKFHHPR 116
                      799********************96 PP
3zf-CCCH38.32.2e-12138162327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C ++++tG+CkyG++CkF+H++
  TRIUR3_13576-P1 138 ERECAYYLKTGQCKYGNTCKFNHPE 162
                      799********************96 PP
4zf-CCCH34.73e-11299324227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C ++ +tG Ck+G+ CkF+H++
  TRIUR3_13576-P1 299 DQPECIYYIKTGDCKFGAVCKFHHPR 324
                      689*********************96 PP
5zf-CCCH41.81.8e-13344370127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++elC+f++r+G+Ck+G +CkF H++
  TRIUR3_13576-P1 344 PGEELCKFYSRYGICKFGVNCKFDHPM 370
                      689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7094472IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-54471IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-84671IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-54973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-45071IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.69489117IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-689116IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-1092116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-595117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6135161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568135163IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5135162IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10138162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5141161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019297325IPR000571Zinc finger, CCCH-type
SMARTSM003560.0071297324IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-7299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5300324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971343371IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7343370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6345370IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10345370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-5347368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MVINTGVRGQ THHQKIQDMK VEGMWQQMAM SSGATMQSGP YPVRPGEPDC TYYLRTGLCR  60
FGMSCRFNHP QDRNTAIASA RMKGEYPERV GQPECQYYLK TGTCKFGPTC KFHHPREKAG  120
IAGMVQLNTL GYPLRPNERE CAYYLKTGQC KYGNTCKFNH PEIFNAVASS RGSPIYPPVH  180
NSGSTGPHSY TGTMASWTYP RGSFIPSPRW QSPSNYTPMI VPQGLVQVPS WNSYPGQMVP  240
VSSPESRLQS PGAQQYYGTS RQGEASAGNQ GMQSSYRSSS FPAPQYALQR ENVFPERPDQ  300
PECIYYIKTG DCKFGAVCKF HHPRVRSQPP PDCILSPMGL PLRPGEELCK FYSRYGICKF  360
GVNCKFDHPM AAPMGVYAYG YSASASPNAP MARRLLESPS GSAYAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679460.0AK367946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151757.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A446P0B60.0A0A446P0B6_TRITD; Uncharacterized protein
TrEMBLM7YT470.0M7YT47_TRIUA; Zinc finger CCCH domain-containing protein 12
STRINGTRIUR3_13576-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-146zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]