PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_13799-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 195aa    MW: 21656.4 Da    PI: 4.2412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_13799-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.24.4e-061359555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     + e E  RR++i  ++  L++l+P +    +k   Ka +L + ++Y++sLq
  TRIUR3_13799-P1 13 KIEDETVRREKITLKMKMLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 59
                     5677889******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-13677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.087858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-131476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-61464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.64E-62063No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGEPTGPDSK KCKIEDETVR REKITLKMKM LQDLVPGCNK VIGKALMLDE IINYVQSLQQ  60
QVEFLSMKLS TVNPQLDFDT LSNLLHKDMN QALGPSASTV FPLESAGTVY PLCDQADLYQ  120
SFSSGAMENQ CSMGLLDMAL PPAPQYPFQK QQQDFWEASA QNGLHMDHEQ SQENAGSAPN  180
FDGQLQAADH PEIEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3635170.0AK363517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195706.11e-126transcription factor bHLH49-like isoform X1
TrEMBLA0A446T7H51e-142A0A446T7H5_TRITD; Uncharacterized protein
TrEMBLM7YRP01e-142M7YRP0_TRIUA; Transcription factor bHLH49
STRINGTRIUR3_13799-P11e-143(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.35e-38bHLH family protein