PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_13919-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 105aa    MW: 12453.1 Da    PI: 9.7465
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_13919-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix26.71.4e-08574268
         trihelix  2 WtkqevlaLiea..rremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikege 68
                     Wt++ ++ ++e+  ++ +  ++ ++ l     +ev+k   +++g+e +pkq+++kw +l+++y   k+ +
  TRIUR3_13919-P1  5 WTDENTRIIVELfvKQVKVGNMPSTHLTPSAYDEVGKEFlMRTGLEYTPKQVRNKWTKLKREYNTFKKLK 74
                     99999999988622556666777889999******98766**********************99887755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127767.6E-24498IPR024752Myb/SANT-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
GSAEWTDENT RIIVELFVKQ VKVGNMPSTH LTPSAYDEVG KEFLMRTGLE YTPKQVRNKW  60
TKLKREYNTF KKLKLRETGG GWDFEKNIVK QDNEWWKNTV KQDNE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-151HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163124.13e-64L10-interacting MYB domain-containing protein-like
TrEMBLT1M8N11e-70T1M8N1_TRIUA; Uncharacterized protein
STRINGTRIUR3_13919-P12e-71(Triticum urartu)