PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_14330-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 260aa    MW: 28625.1 Da    PI: 5.9734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_14330-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.7e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed +l+ +++++G  +W++ +r  g+ R++k+c++rw +yl
  TRIUR3_14330-P1 16 RGSWTPQEDMRLIAYIQKHGHANWRALPRQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding521.6e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+   ++++++lG++ W++Ia++++ gRt++++k+ w+++l
  TRIUR3_14330-P1  69 RGNFTAEEEATVIKLHALLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-22766IPR009057Homeodomain-like
PROSITE profilePS5129414.2111163IPR017930Myb domain
SuperFamilySSF466891.5E-2913110IPR009057Homeodomain-like
SMARTSM007171.4E-121565IPR001005SANT/Myb domain
PfamPF002494.9E-151663IPR001005SANT/Myb domain
CDDcd001671.24E-91863No hitNo description
PROSITE profilePS5129424.87664118IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2667117IPR009057Homeodomain-like
SMARTSM007173.8E-1468116IPR001005SANT/Myb domain
PfamPF002495.7E-1569114IPR001005SANT/Myb domain
CDDcd001671.23E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPRQAGLLR CGKSCRLRWI  60
NYLRPDLRRG NFTAEEEATV IKLHALLGNK WSKIAACLPG RTDNEIKNVW NTHLKKKARC  120
NSAMYDQGQP GGGGKRVVVG GFGEGTRPCA GGGGGVEELL ELPDIDMDAD IWSIIDDDVA  180
RLQQGDATVP CTTKASPEEE GNEWWLADLE KELGLWGPTE ESQPQAGPHD QIGYPGQDME  240
MVMSSSYPQS RSDHEASNSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-261411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2486491e-131AK248649.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178a22, mRNA sequence.
GenBankAK3696891e-131AK369689.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095N02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572844.11e-101myb-related protein Zm1
SwissprotP200243e-76MYB1_MAIZE; Myb-related protein Zm1
TrEMBLM7ZWI70.0M7ZWI7_TRIUA; Myb-related protein Zm1
STRINGTRIUR3_14330-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-67myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]