PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_14531-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 494aa    MW: 54636.2 Da    PI: 7.4748
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_14531-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012176198123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ C+k +  +s+ + H + +
  TRIUR3_14531-P1 176 WKCERCSKKYAVQSDWRAHTKIC 198
                      58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.04E-699122No hitNo description
Gene3DG3DSA:3.30.160.606.2E-599122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.907100122IPR007087Zinc finger, C2H2
SMARTSM003550.094100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SMARTSM0035550141171IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4164197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.04E-6171196No hitNo description
SMARTSM00355210176196IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MSQTSEEESL FNFQQQQKLA LCEAALSKGD PIIHAGKKRR GHPGQPGKVT VVAYIVSVFM  60
RCGQEQQSVN ITHLHLVHCA DPDAEVVAFS PKTLLATNRY ICEVCHKGFQ RDQNLQLHRR  120
CHNLPWKLKQ TSGTDAKKKV YICPEATCPH HDATRALGDL TGIKKHYSRK HGEKKWKCER  180
CSKKYAVQSD WRAHTKICGT KEYRCDCGTI FSRKDSFITH RAFCDALTED NSRINQSLAA  240
MVGSLHGQQQ SIFPHTIPGP DSSPNDAAGN FSGNDHSSDD HLGSLSPYTF IRRSTSLFSN  300
QMILPHDSGT LADGSEPSSP YMSMSSPYMS ATALLQKAAE MGAKTSEDPT TPLLLKGFPN  360
YFTTKGHIGI SSGILGTPIA NSDRKKTAED NSSYMNSPWT GSCMRPPNAV PWIGLPPFSM  420
GAENRSSSMV DEDHMQQNAH ETIFGVRDVG LTQDFLGLGG HGNAEMHDDT YNGEMALSYS  480
NEQQKSEQDI YSYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33172235366Zinc finger protein JACKDAW
5b3h_F2e-33172235366Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201379.10.0protein indeterminate-domain 12-like
TrEMBLT1MAB80.0T1MAB8_TRIUA; Uncharacterized protein
STRINGTRIUR3_14531-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-94indeterminate(ID)-domain 2