PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_14746-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 309aa    MW: 35469.6 Da    PI: 7.6511
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_14746-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-16161251198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+ v+ + +v ++  l++p ++a+++  +  e+ ++   +++gr+We ++  + + g+  lt GWk+Fv++n+Lk gD+++Fkl +  e++++v
  TRIUR3_14746-P1 161 FVAVMRKCNVVAEFYLTFPMHHAKKYLTE--EP-DMC-LQRQGRKWEARY--CEYNGGEKLTIGWKQFVEDNKLKMGDICLFKLLS-IERTMKV 247
                      566777778889999***********533..33.466.567*********..67777777***********************987.5666888 PP

                      EEE- CS
               B3  95 kvfr 98 
                       +++
  TRIUR3_14746-P1 248 YIIS 251
                      8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.193143IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-10551IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-7641No hitNo description
SuperFamilySSF1019365.69E-10647IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-21153252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-18155250IPR015300DNA-binding pseudobarrel domain
CDDcd100172.70E-19159251No hitNo description
SMARTSM010191.3E-12161253IPR003340B3 DNA binding domain
PfamPF023626.0E-16161252IPR003340B3 DNA binding domain
PROSITE profilePS5086312.393161253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEILSLQVGW GKFVGTFGLE MGDTIVFRYI GNSRFNVIIF DELGCEKTIQ TQPFSIGKGM  60
PMESPRLQME MDKSCQDNNT VISVSSRESS GDPVYYEEEC GVREVPGSDF NVRKKKARLS  120
SNQKQQLKDC YFTSRKTKLT STQKEAVKRM VQSIYSEIPI FVAVMRKCNV VAEFYLTFPM  180
HHAKKYLTEE PDMCLQRQGR KWEARYCEYN GGEKLTIGWK QFVEDNKLKM GDICLFKLLS  240
IERTMKVYII SENVANYRAG LQNDTDREAV FRRGAHHADG ACDPDSRFLR ITKTEAMEDD  300
AVFKTEDGA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186791.10.0putative B3 domain-containing protein Os08g0325100 isoform X2
RefseqXP_020186792.10.0putative B3 domain-containing protein Os08g0325100 isoform X3
RefseqXP_020186793.10.0putative B3 domain-containing protein Os08g0325100 isoform X3
RefseqXP_020186794.10.0putative B3 domain-containing protein Os08g0325100 isoform X3
TrEMBLT1MAW90.0T1MAW9_TRIUA; Uncharacterized protein
STRINGTRIUR3_14746-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-17B3 family protein