PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_14872-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 213aa    MW: 22549.6 Da    PI: 9.9489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_14872-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-072082455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC..............TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkas...........kapskKlsKaeiLekAveYIksLq 55
                       + +E++RR +++    +L +l+P++s           + ++   +  + L  A  YIk+L+
  TRIUR3_14872-P1 20 ERKDVEKNRRLHMKGLCLKLSSLVPPSSahysstsssppSSNKDAATQLDQLDSAAAYIKQLR 82
                     56899*********************888********96666666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.8451681IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-91894IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-101892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-42081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKGRRQSMVP DGGCSASKME RKDVEKNRRL HMKGLCLKLS SLVPPSSAHY SSTSSSPPSS  60
NKDAATQLDQ LDSAAAYIKQ LRGRIDDLKR RKQAALSGGT AGCSSSVSAG DYKSQTASLP  120
VIEVRHQDGT LDVALASESG RPFRLHEVIA VLEQEGAEVV SASFSVVGDK IFYTVHSQAM  180
CPRIGLEPGR VAHRLRGLAA AAAATVSSSV LLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-123HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183666.11e-122uncharacterized protein LOC109769325
TrEMBLM7YFE71e-152M7YFE7_TRIUA; Uncharacterized protein
STRINGTRIUR3_14872-P11e-153(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-21bHLH family protein