PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_14889-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 237aa    MW: 25940.3 Da    PI: 7.6826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_14889-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-1074121454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++  rE+ RRdr+N++f+eL  +l +    + +K +K++iL  A++ + +L
  TRIUR3_14889-P1  74 TKACREKLRRDRLNERFNELCAVLEPG---KPPKADKVAILSDATRLLDQL 121
                      6789**********************9...99**************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1263136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.07470121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-774121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-674126No hitNo description
SMARTSM003535.6E-776127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-1276144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSCGVGQGGW LLDYGLVEEE IQASDFIYMV DDPPVSSVIL GFDAPRREDA AAAAQDNSGA  60
KKRSRPESSA QPGTKACREK LRRDRLNERF NELCAVLEPG KPPKADKVAI LSDATRLLDQ  120
LRAEAQKLKA SNESLQDSIK SLKGKWAPSV CFCICVYGDR GDRREGTKSL LEMAAGEQGK  180
YSHRVAVRTH RGAAGEQLLQ VDDEDGMGQR CGCLLTRQIR LNHLTGGDFM GGGWKRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3558051e-166AK355805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1026E13.
GenBankAK3721681e-166AK372168.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147J14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165655.12e-94transcription factor ILR3-like
TrEMBLM7ZIV21e-173M7ZIV2_TRIUA; Transcription factor ILR3
STRINGTRIUR3_14889-P11e-174(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93863136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-31bHLH family protein