PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_15782-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 179aa    MW: 20276.5 Da    PI: 7.5074
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_15782-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.74.2e-30959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien+snrqvtfskR+ngilKKA+E+SvLCdaev v++fss gkly+++s
  TRIUR3_15782-P1  9 KRIENQSNRQVTFSKRKNGILKKAKEISVLCDAEVGVVVFSSAGKLYDFCS 59
                     79***********************************************96 PP
2K-box63.48.3e-2271133163
            K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslk 63 
                      yq++sgk l+++k++sl+ e++++kke++n+q e+Rhl+GedL+sL+ keL  +e++L+++l+
  TRIUR3_15782-P1  71 YQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLT 133
                      89999999*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.828161IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-34296IPR002100Transcription factor, MADS-box
CDDcd002656.88E-42280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-30323IPR002100Transcription factor, MADS-box
PfamPF003199.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.8E-1282162IPR002487Transcription factor, K-box
PROSITE profilePS5129710.484170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGRGKIEIKR IENQSNRQVT FSKRKNGILK KAKEISVLCD AEVGVVVFSS AGKLYDFCSP  60
KTSLSRILEK YQTNSGKILW DEKHKSLSAE IDRIKKENDN MQIELRHLKG EDLNSLQPKE  120
LIMIEEALDN GLTILSHFAL IHCFIGQLQG KMLEDENKLL AFKVVSDLAD GSLVELLFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-21186178Myocyte-specific enhancer factor 2B
1tqe_Q4e-21186178Myocyte-specific enhancer factor 2B
1tqe_R4e-21186178Myocyte-specific enhancer factor 2B
1tqe_S4e-21186178Myocyte-specific enhancer factor 2B
6c9l_A4e-21186178Myocyte-specific enhancer factor 2B
6c9l_B4e-21186178Myocyte-specific enhancer factor 2B
6c9l_C4e-21186178Myocyte-specific enhancer factor 2B
6c9l_D4e-21186178Myocyte-specific enhancer factor 2B
6c9l_E4e-21186178Myocyte-specific enhancer factor 2B
6c9l_F4e-21186178Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1079920.0AB107992.1 Triticum aestivum WPI2 mRNA for PISTILLATA-like MADS box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172714.11e-100MADS-box transcription factor 2
SwissprotQ407024e-95MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLA0A446NYI41e-126A0A446NYI4_TRITD; Uncharacterized protein
TrEMBLM7ZI251e-126M7ZI25_TRIUA; MADS-box transcription factor 2
STRINGTRIUR3_15782-P11e-127(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.19e-61MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]