PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_15856-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 200aa    MW: 21119.2 Da    PI: 9.2764
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_15856-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.53.6e-244190151
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                     k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQ
  TRIUR3_15856-P1 41 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGINSLTRHNIASHLQ 90
                     6799*****************.****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.8593894IPR017930Myb domain
SuperFamilySSF466892.69E-153990IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-233990IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-234190IPR006447Myb domain, plants
PfamPF002499.5E-74490IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGGGDRPVVP DAKSPSSTTS SSTEAESRHK SSSKSSHGKK KAKVDWTPEL HRRFVQAVEQ  60
LGIDKAVPSR ILEIMGINSL TRHNIASHLQ GPAAYMPTHG TPCMAMPMAP KFPAPPVPVA  120
MPCPVYTPPS TPPALASKNQ QESQLQLQAQ PSNESIDAAI GDVLSKPWLP LPLGLKPPSL  180
GSVMGELERQ GVANVPQACG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-153890254ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1054060.0EF105406.1 Triticum aestivum golden 2-like protein (Glk1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018623137.12e-51PREDICTED: transcription activator GLK1-like isoform X3
TrEMBLM8AMJ91e-143M8AMJ9_TRIUA; Putative transcription factor GLK1
STRINGTRIUR3_15856-P11e-143(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44190.11e-23GOLDEN2-like 2